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{{short description|American pharmaceutical chemist}}
{{Infobox scientist
{{Infobox scientist
| name = Patricia Babbitt
| name = Patricia Babbitt
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| birth_date = <!--{{birth date |YYYY|MM|DD}}-->
| birth_date = <!--{{birth date |YYYY|MM|DD}}-->
| birth_place =
| birth_place =
| fields = [[Bioinformatics]]<br>[[Computational biology]]
| fields = [[Bioinformatics]]<ref name=googlescholar/><br>[[Computational biology]]<ref name=googlescholar/>
| workplaces = [[University of California, San Francisco]]
| workplaces = [[University of California, San Francisco]]
| education = [[University of California, San Francisco]] (PhD)
| education = [[University of California, San Francisco]] (PhD)
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| thesis_url = https://search.proquest.com/docview/303714424
| thesis_url = https://search.proquest.com/docview/303714424
| thesis_year = 1988
| thesis_year = 1988
| doctoral_advisor = George L. Kenyon<ref name=bphd/><br>[[Irwin "Tack" Kuntz]]<ref name=bphd>{{cite thesis|degree=PhD|publisher=University of California, San Francisco|title=Sequence determination, expression, and site-directed mutagenesis of creatine kinase|url=https://search.proquest.com/docview/303714424|website=proquest.com|first=Patricia Clement|last=Babbit|year=1988|oclc=19528718}} {{subscription required}}</ref>
| doctoral_advisor = George L. Kenyon<ref name=bphd/><br>[[Irwin "Tack" Kuntz|Irwin Kuntz]]<ref name=bphd>{{cite thesis|degree=PhD|publisher=University of California, San Francisco|title=Sequence determination, expression, and site-directed mutagenesis of creatine kinase|first=Patricia Clement|last=Babbit|year=1988|oclc=19528718|id={{ProQuest|303714424}}}} {{subscription required}}</ref>
| academic_advisors =
| academic_advisors =
| doctoral_students =
| doctoral_students =
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| partner = <!--(or | partners = )-->
| partner = <!--(or | partners = )-->
| children =
| children =
| website = {{URL|http://profiles.ucsf.edu/patricia.babbitt}}
| website = {{Official URL}}
}}
}}


'''Patricia Clement Babbitt''' is a [[Professor]] and [[Principal Investigator]] (PI) in the School of [[Pharmacy]] at the [[University of California, San Francisco]] (UCSF).<ref name=ucsfprofile>{{cite web|url=http://profiles.ucsf.edu/patricia.babbitt|title=Patricia Babbitt - UCSF Profiles|website=profiles.ucsf.edu}}</ref><ref name=lab>{{cite web|url=http://babbittlab.ucsf.edu/|title=Babbitt Lab Website|website=babbittlab.ucsf.edu}}</ref><ref name="GerltBabbitt2001">{{cite journal|last1=Gerlt|first1=John A.|last2=Babbitt|first2=Patricia C.|title=Divergent Evolution of Enzymatic Function: Mechanistically Diverse Superfamilies and Functionally Distinct Suprafamilies|journal=[[Annual Review of Biochemistry]]|volume=70|issue=1|year=2001|pages=209–246|issn=0066-4154|doi=10.1146/annurev.biochem.70.1.209|pmid= 11395407}} {{closed access}}</ref><ref name="RadivojacClark2013">{{cite journal|last1=Radivojac|first1=Predrag|last2=Clark|first2=Wyatt T|last3=Oron|first3=Tal Ronnen|last4=Schnoes|first4=Alexandra M|last5=Wittkop|first5=Tobias|last6=Sokolov|first6=Artem|last7=Graim|first7=Kiley|last8=Funk|first8=Christopher|last9=Verspoor|first9=Karin|last10=Ben-Hur|first10=Asa|last11=Pandey|first11=Gaurav|last12=Yunes|first12=Jeffrey M|last13=Talwalkar|first13=Ameet S|last14=Repo|first14=Susanna|last15=Souza|first15=Michael L|last16=Piovesan|first16=Damiano|last17=Casadio|first17=Rita|last18=Wang|first18=Zheng|last19=Cheng|first19=Jianlin|last20=Fang|first20=Hai|last21=Gough|first21=Julian|last22=Koskinen|first22=Patrik|last23=Törönen|first23=Petri|last24=Nokso-Koivisto|first24=Jussi|last25=Holm|first25=Liisa|last26=Cozzetto|first26=Domenico|last27=Buchan|first27=Daniel W A|last28=Bryson|first28=Kevin|last29=Jones|first29=David T|last30=Limaye|first30=Bhakti|last31=Inamdar|first31=Harshal|last32=Datta|first32=Avik|last33=Manjari|first33=Sunitha K|last34=Joshi|first34=Rajendra|last35=Chitale|first35=Meghana|last36=Kihara|first36=Daisuke|last37=Lisewski|first37=Andreas M|last38=Erdin|first38=Serkan|last39=Venner|first39=Eric|last40=Lichtarge|first40=Olivier|last41=Rentzsch|first41=Robert|last42=Yang|first42=Haixuan|last43=Romero|first43=Alfonso E|last44=Bhat|first44=Prajwal|last45=Paccanaro|first45=Alberto|last46=Hamp|first46=Tobias|last47=Kaßner|first47=Rebecca|last48=Seemayer|first48=Stefan|last49=Vicedo|first49=Esmeralda|last50=Schaefer|first50=Christian|last51=Achten|first51=Dominik|last52=Auer|first52=Florian|last53=Boehm|first53=Ariane|last54=Braun|first54=Tatjana|last55=Hecht|first55=Maximilian|last56=Heron|first56=Mark|last57=Hönigschmid|first57=Peter|last58=Hopf|first58=Thomas A|last59=Kaufmann|first59=Stefanie|last60=Kiening|first60=Michael|last61=Krompass|first61=Denis|last62=Landerer|first62=Cedric|last63=Mahlich|first63=Yannick|last64=Roos|first64=Manfred|last65=Björne|first65=Jari|last66=Salakoski|first66=Tapio|last67=Wong|first67=Andrew|last68=Shatkay|first68=Hagit|last69=Gatzmann|first69=Fanny|last70=Sommer|first70=Ingolf|last71=Wass|first71=Mark N|last72=Sternberg|first72=Michael J E|last73=Škunca|first73=Nives|last74=Supek|first74=Fran|last75=Bošnjak|first75=Matko|last76=Panov|first76=Panče|last77=Džeroski|first77=Sašo|last78=Šmuc|first78=Tomislav|last79=Kourmpetis|first79=Yiannis A I|last80=van Dijk|first80=Aalt D J|last81=Braak|first81=Cajo J F ter|last82=Zhou|first82=Yuanpeng|last83=Gong|first83=Qingtian|last84=Dong|first84=Xinran|last85=Tian|first85=Weidong|last86=Falda|first86=Marco|last87=Fontana|first87=Paolo|last88=Lavezzo|first88=Enrico|last89=Di Camillo|first89=Barbara|last90=Toppo|first90=Stefano|last91=Lan|first91=Liang|last92=Djuric|first92=Nemanja|last93=Guo|first93=Yuhong|last94=Vucetic|first94=Slobodan|last95=Bairoch|first95=Amos|last96=Linial|first96=Michal|last97=Babbitt|first97=Patricia C|last98=Brenner|first98=Steven E|last99=Orengo|first99=Christine|last100=Rost|first100=Burkhard|last101=Mooney|first101=Sean D|last102=Friedberg|first102=Iddo|display-authors=13|title=A large-scale evaluation of computational protein function prediction|journal=[[Nature Methods]]|volume=10|issue=3|year=2013|pages=221–227|issn=1548-7091|doi=10.1038/nmeth.2340|pmid=23353650|pmc=3584181 }} {{open access}}</ref> She was elected a [[fellow]] of the [[International Society for Computational Biology]] (ISCB) in 2018 for outstanding contributions to the fields of computational biology and bioinformatics.<ref name=iscb>{{cite web|url=https://www.iscb.org/iscb-fellows|title=ISCB Fellows|website=iscb.org|publisher=International Society for Computational Biology|author=Anon|year=2018|publisher=International Society for Computational Biology}}</ref>
'''Patricia Clement Babbitt''' is a [[Professor]] and [[Principal Investigator]] (PI) in the school of [[pharmacy]] at the [[University of California, San Francisco]] (UCSF).<ref name=googlescholar>{{Google scholar id}}</ref><ref name=ucsfprofile>{{cite web|url=http://profiles.ucsf.edu/patricia.babbitt|title=Patricia Babbitt UCSF Profile|website=profiles.ucsf.edu}}</ref><ref name=lab>{{cite web|url=http://babbittlab.ucsf.edu/|title=Babbitt Lab Website|website=babbittlab.ucsf.edu|access-date=2018-03-14|archive-date=2017-12-19|archive-url=https://web.archive.org/web/20171219211041/http://babbittlab.ucsf.edu/|url-status=dead}}</ref><ref name="GerltBabbitt2001">{{cite journal|last1=Gerlt|first1=John A.|last2=Babbitt|first2=Patricia C.|title=Divergent Evolution of Enzymatic Function: Mechanistically Diverse Superfamilies and Functionally Distinct Suprafamilies|journal=[[Annual Review of Biochemistry]]|volume=70|issue=1|year=2001|pages=209–246|issn=0066-4154|doi=10.1146/annurev.biochem.70.1.209|pmid= 11395407}} {{closed access}}</ref><ref name="RadivojacClark2013">{{cite journal|last1=Radivojac|first1=Predrag|last2=Clark|first2=Wyatt T|last3=Oron|first3=Tal Ronnen|last4=Schnoes|first4=Alexandra M|last5=Wittkop|first5=Tobias|last6=Sokolov|first6=Artem|last7=Graim|first7=Kiley|last8=Funk|first8=Christopher|last9=Verspoor|first9=Karin|last10=Ben-Hur|first10=Asa|last11=Pandey|first11=Gaurav|last12=Yunes|first12=Jeffrey M|last13=Talwalkar|first13=Ameet S|last14=Repo|first14=Susanna|last15=Souza|first15=Michael L|last16=Piovesan|first16=Damiano|last17=Casadio|first17=Rita|last18=Wang|first18=Zheng|last19=Cheng|first19=Jianlin|last20=Fang|first20=Hai|last21=Gough|first21=Julian|last22=Koskinen|first22=Patrik|last23=Törönen|first23=Petri|last24=Nokso-Koivisto|first24=Jussi|last25=Holm|first25=Liisa|last26=Cozzetto|first26=Domenico|last27=Buchan|first27=Daniel W A|last28=Bryson|first28=Kevin|last29=Jones|first29=David T|last30=Limaye|first30=Bhakti|last31=Inamdar|first31=Harshal|last32=Datta|first32=Avik|last33=Manjari|first33=Sunitha K|last34=Joshi|first34=Rajendra|last35=Chitale|first35=Meghana|last36=Kihara|first36=Daisuke|last37=Lisewski|first37=Andreas M|last38=Erdin|first38=Serkan|last39=Venner|first39=Eric|last40=Lichtarge|first40=Olivier|last41=Rentzsch|first41=Robert|last42=Yang|first42=H|last43=Romero|first43=Alfonso E|last44=Bhat|first44=Prajwal|last45=Paccanaro|first45=Alberto|last46=Hamp|first46=Tobias|last47=Kaßner|first47=Rebecca|last48=Seemayer|first48=Stefan|last49=Vicedo|first49=Esmeralda|last50=Schaefer|first50=Christian|last51=Achten|first51=Dominik|last52=Auer|first52=Florian|last53=Boehm|first53=Ariane|last54=Braun|first54=Tatjana|last55=Hecht|first55=Maximilian|last56=Heron|first56=Mark|last57=Hönigschmid|first57=Peter|last58=Hopf|first58=Thomas A|last59=Kaufmann|first59=Stefanie|last60=Kiening|first60=Michael|last61=Krompass|first61=Denis|last62=Landerer|first62=Cedric|last63=Mahlich|first63=Yannick|last64=Roos|first64=Manfred|last65=Björne|first65=Jari|last66=Salakoski|first66=Tapio|last67=Wong|first67=Andrew|last68=Shatkay|first68=Hagit|last69=Gatzmann|first69=Fanny|last70=Sommer|first70=Ingolf|last71=Wass|first71=Mark N|last72=Sternberg|first72=Michael J E|last73=Škunca|first73=Nives|last74=Supek|first74=Fran|last75=Bošnjak|first75=Matko|last76=Panov|first76=Panče|last77=Džeroski|first77=Sašo|last78=Šmuc|first78=Tomislav|last79=Kourmpetis|first79=Yiannis A I|last80=van Dijk|first80=Aalt D J|last81=Braak|first81=Cajo J F ter|last82=Zhou|first82=Yuanpeng|last83=Gong|first83=Qingtian|last84=Dong|first84=Xinran|last85=Tian|first85=Weidong|last86=Falda|first86=Marco|last87=Fontana|first87=Paolo|last88=Lavezzo|first88=Enrico|last89=Di Camillo|first89=Barbara|last90=Toppo|first90=Stefano|last91=Lan|first91=Liang|last92=Djuric|first92=Nemanja|last93=Guo|first93=Yuhong|last94=Vucetic|first94=Slobodan|last95=Bairoch|first95=Amos|last96=Linial|first96=Michal|last97=Babbitt|first97=Patricia C|last98=Brenner|first98=Steven E|last99=Orengo|first99=Christine|last100=Rost|first100=Burkhard|last101=Mooney|first101=Sean D|last102=Friedberg|first102=Iddo|display-authors=13|title=A large-scale evaluation of computational protein function prediction|journal=[[Nature Methods]]|volume=10|issue=3|year=2013|pages=221–227|issn=1548-7091|doi=10.1038/nmeth.2340|pmid=23353650|pmc=3584181 }} {{open access}}</ref><ref name=epmc>{{EuropePMC}}</ref>

==Education==
Patricia Babbitt earned a [[PhD]] in [[medicinal chemistry|pharmaceutical chemistry]] in 1988 from the University of California, San Francisco<ref name=bphd/><ref name=ucsfprofile/> for research supervised by George L. Kenyon and [[Irwin "Tack" Kuntz|Irwin Kuntz]].<ref name=bphd/>

==Career and research==
{{Scholia}}
Babbitt serves as the director of the UCSF [[bioinformatics]] and [[medical informatics]] graduate program.{{fact|date=May 2020}} She also serves on the advisory boards for the [[UniProt]], [[InterPro]]<ref name="FinnAttwood2017">{{cite journal|last1=Finn|first1=Robert D.|last2=Attwood|first2=Teresa K.|last3=Babbitt|first3=Patricia C.|last4=Bateman|first4=Alex|last5=Bork|first5=Peer|last6=Bridge|first6=Alan J.|last7=Chang|first7=Hsin-Yu|last8=Dosztányi|first8=Zsuzsanna|last9=El-Gebali|first9=Sara|last10=Fraser|first10=Matthew|last11=Gough|first11=Julian|last12=Haft|first12=David|last13=Holliday|first13=Gemma L.|last14=Huang|first14=Hongzhan|last15=Huang|first15=Xiaosong|last16=Letunic|first16=Ivica|last17=Lopez|first17=Rodrigo|last18=Lu|first18=Shennan|last19=Marchler-Bauer|first19=Aron|last20=Mi|first20=Huaiyu|last21=Mistry|first21=Jaina|last22=Natale|first22=Darren A.|last23=Necci|first23=Marco|last24=Nuka|first24=Gift|last25=Orengo|first25=Christine A.|last26=Park|first26=Youngmi|last27=Pesseat|first27=Sebastien|last28=Piovesan|first28=Damiano|last29=Potter|first29=Simon C.|last30=Rawlings|first30=Neil D.|last31=Redaschi|first31=Nicole|last32=Richardson|first32=Lorna|last33=Rivoire|first33=Catherine|last34=Sangrador-Vegas|first34=Amaia|last35=Sigrist|first35=Christian|last36=Sillitoe|first36=Ian|last37=Smithers|first37=Ben|last38=Squizzato|first38=Silvano|last39=Sutton|first39=Granger|last40=Thanki|first40=Narmada|last41=Thomas|first41=Paul D|last42=Tosatto|first42=Silvio C. E.|last43=Wu|first43=Cathy H.|last44=Xenarios|first44=Ioannis|last45=Yeh|first45=Lai-Su|last46=Young|first46=Siew-Yit|last47=Mitchell|first47=Alex L.|pmid= 27899635 |pmc=5210578 |title=InterPro in 2017—beyond protein family and domain annotations|journal=Nucleic Acids Research|volume=45|issue=D1|year=2017|pages=D190–D199|issn=0305-1048|doi=10.1093/nar/gkw1107}}</ref> and [[MetaCyc]] databases, the [[Howard Hughes Medical Institute]] (HHMI) scientific review board, and as a deputy editor for ''[[PLOS Computational Biology]]''.<ref name="lecture">{{cite web |title=CMNS Distinguished Woman Faculty Lecture |url=https://cmns.umd.edu/news-events/events/3444|website=umd.edu|publisher=[[University of Maryland]]}}</ref> Her research interests include bioinformatics and [[computational biology]].<ref name=googlescholar/><ref name=epmc/><ref name=dblp>{{DBLP}}</ref>
===Awards and honors===
Babbitt was elected a [[Fellow]] of the [[International Society for Computational Biology]] (ISCB) in 2018 for “outstanding contributions to the fields of computational biology and bioinformatics”.<ref name=iscb>{{cite web|url=https://www.iscb.org/iscb-fellows|title=ISCB Fellows|website=iscb.org|author=Anon|year=2018|publisher=International Society for Computational Biology|access-date=2018-03-14|archive-url=https://web.archive.org/web/20170320114530/https://www.iscb.org/iscb-fellows|archive-date=2017-03-20|url-status=dead}}</ref>


==References==
==References==
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{{reflist}}


{{ISCB Fellows}}
{{ISCB Fellows}}


{{Authority control}}
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{{DEFAULTSORT:Babbitt, Patricia Clement}}
{{DEFAULTSORT:Babbitt, Patricia Clement}}
[[Category:Living people]]
[[Category:Living people]]
[[Category:Bioinformaticians]]
[[Category:American bioinformaticians]]
[[Category:Year of birth missing (living people)]]
[[Category:University of California, San Francisco faculty]]

Revision as of 07:31, 14 June 2021

Patricia Babbitt
Born
Patricia Clement Babbitt
EducationUniversity of California, San Francisco (PhD)
AwardsISCB Fellow (2018)[1]
Scientific career
FieldsBioinformatics[2]
Computational biology[2]
InstitutionsUniversity of California, San Francisco
ThesisSequence determination, expression, and site-directed mutagenesis of creatine kinase (1988)
Doctoral advisorGeorge L. Kenyon[3]
Irwin Kuntz[3]
Websiteprofiles.ucsf.edu/patricia.babbitt Edit this at Wikidata

Patricia Clement Babbitt is a Professor and Principal Investigator (PI) in the school of pharmacy at the University of California, San Francisco (UCSF).[2][4][5][6][7][8]

Education

Patricia Babbitt earned a PhD in pharmaceutical chemistry in 1988 from the University of California, San Francisco[3][4] for research supervised by George L. Kenyon and Irwin Kuntz.[3]

Career and research

Scholia has a profile for Patricia Babbitt (Q50486645).

Babbitt serves as the director of the UCSF bioinformatics and medical informatics graduate program.[citation needed] She also serves on the advisory boards for the UniProt, InterPro[9] and MetaCyc databases, the Howard Hughes Medical Institute (HHMI) scientific review board, and as a deputy editor for PLOS Computational Biology.[10] Her research interests include bioinformatics and computational biology.[2][8][11]

Awards and honors

Babbitt was elected a Fellow of the International Society for Computational Biology (ISCB) in 2018 for “outstanding contributions to the fields of computational biology and bioinformatics”.[1]

References

  1. ^ a b Anon (2018). "ISCB Fellows". iscb.org. International Society for Computational Biology. Archived from the original on 2017-03-20. Retrieved 2018-03-14.
  2. ^ a b c d Patricia Babbitt publications indexed by Google Scholar Edit this at Wikidata
  3. ^ a b c d Babbit, Patricia Clement (1988). Sequence determination, expression, and site-directed mutagenesis of creatine kinase (PhD thesis). University of California, San Francisco. OCLC 19528718. ProQuest 303714424. (subscription required)
  4. ^ a b "Patricia Babbitt UCSF Profile". profiles.ucsf.edu.
  5. ^ "Babbitt Lab Website". babbittlab.ucsf.edu. Archived from the original on 2017-12-19. Retrieved 2018-03-14.
  6. ^ Gerlt, John A.; Babbitt, Patricia C. (2001). "Divergent Evolution of Enzymatic Function: Mechanistically Diverse Superfamilies and Functionally Distinct Suprafamilies". Annual Review of Biochemistry. 70 (1): 209–246. doi:10.1146/annurev.biochem.70.1.209. ISSN 0066-4154. PMID 11395407. Closed access icon
  7. ^ Radivojac, Predrag; Clark, Wyatt T; Oron, Tal Ronnen; Schnoes, Alexandra M; Wittkop, Tobias; Sokolov, Artem; Graim, Kiley; Funk, Christopher; Verspoor, Karin; Ben-Hur, Asa; Pandey, Gaurav; Yunes, Jeffrey M; Talwalkar, Ameet S; et al. (2013). "A large-scale evaluation of computational protein function prediction". Nature Methods. 10 (3): 221–227. doi:10.1038/nmeth.2340. ISSN 1548-7091. PMC 3584181. PMID 23353650. Open access icon
  8. ^ a b Patricia Babbitt publications from Europe PubMed Central
  9. ^ Finn, Robert D.; Attwood, Teresa K.; Babbitt, Patricia C.; Bateman, Alex; Bork, Peer; Bridge, Alan J.; Chang, Hsin-Yu; Dosztányi, Zsuzsanna; El-Gebali, Sara; Fraser, Matthew; Gough, Julian; Haft, David; Holliday, Gemma L.; Huang, Hongzhan; Huang, Xiaosong; Letunic, Ivica; Lopez, Rodrigo; Lu, Shennan; Marchler-Bauer, Aron; Mi, Huaiyu; Mistry, Jaina; Natale, Darren A.; Necci, Marco; Nuka, Gift; Orengo, Christine A.; Park, Youngmi; Pesseat, Sebastien; Piovesan, Damiano; Potter, Simon C.; Rawlings, Neil D.; Redaschi, Nicole; Richardson, Lorna; Rivoire, Catherine; Sangrador-Vegas, Amaia; Sigrist, Christian; Sillitoe, Ian; Smithers, Ben; Squizzato, Silvano; Sutton, Granger; Thanki, Narmada; Thomas, Paul D; Tosatto, Silvio C. E.; Wu, Cathy H.; Xenarios, Ioannis; Yeh, Lai-Su; Young, Siew-Yit; Mitchell, Alex L. (2017). "InterPro in 2017—beyond protein family and domain annotations". Nucleic Acids Research. 45 (D1): D190–D199. doi:10.1093/nar/gkw1107. ISSN 0305-1048. PMC 5210578. PMID 27899635.
  10. ^ "CMNS Distinguished Woman Faculty Lecture". umd.edu. University of Maryland.
  11. ^ Patricia Babbitt at DBLP Bibliography Server Edit this at Wikidata
Retrieved from "https://en.wikipedia.org/enwiki/w/index.php?title=Patricia_Babbitt&oldid=1028482359"