Robert Gentleman (statistician): Difference between revisions
m Removed dead website link |
+img |
||
(48 intermediate revisions by 36 users not shown) | |||
Line 1: | Line 1: | ||
{{Short description|Canadian statistician}} |
|||
{{for|the British water polo player|Robert Gentleman}} |
|||
{{Infobox scientist |
{{Infobox scientist |
||
|name = Robert |
| name = Robert Gentleman |
||
| image = Robert Gentleman on R Consortium.jpg |
|||
|image = <!-- Freely licenced images only. Please do not put a fair-use image here, it will be deleted - see [[WP:NONFREE]] --> |
|||
|image_size = |
| image_size = |
||
|caption |
| caption = Gentleman in 2020 |
||
| birth_name = |
| birth_name = Robert Clifford Gentleman |
||
| birth_date = |
| birth_date = |
||
| birth_place = |
| birth_place = |
||
| other_names = |
| other_names = |
||
| nationality = |
| nationality = |
||
| workplaces = [[Genentech]]<br>[[University of Washington]]<br>[[Harvard University]]<br>[[The University of Auckland]] |
| workplaces = [[Genentech]]<br>[[University of Washington]]<br>[[Harvard Medical School]]<br>[[University of Waterloo]]<br>[[The University of Auckland]] |
||
| alma_mater = [[University of Washington]]<br>[[University of British Columbia]] |
| alma_mater = [[University of Washington]]<br>[[University of British Columbia]] |
||
| thesis_title = Exploratory methods for censored data |
| thesis_title = Exploratory methods for censored data |
||
| thesis_url = http://search.proquest.com/docview/303589316 |
| thesis_url = http://search.proquest.com/docview/303589316 |
||
| thesis_year = 1988 |
| thesis_year = 1988 |
||
| doctoral_advisor = John James Crowley<ref name="mathgene">{{MathGenealogy|id=26386}}</ref> |
| doctoral_advisor = John James Crowley<ref name="mathgene">{{MathGenealogy|id=26386}}</ref> |
||
| doctoral_students = |
|||
| doctoral_students = Beiying Ding<ref name="dingphd">{{cite thesis |degree=PhD |first=Beiying|last=Ding |title=Methods for analyzing high dimensional data: Classification, measurement error model and graph based association measures, with applications to microarray data |publisher=Harvard University |date=2004 |url=http://search.proquest.com/docview/305191728}}</ref><br>Denise Scholtens<ref name="scholtensphd">{{cite thesis |degree=PhD |first=Denise Marie|last=Scholtens |title=Studies in multidimensional data: Estimation of the bivariate survival curve, analysis of factorial designed microarray experiments, identification of protein complex membership |publisher=Harvard University |date=2004 |url=http://search.proquest.com/docview/305189090}}</ref><br>Alain C. Vandal <ref name="vandalphd">{{cite thesis |degree=PhD |first=Alain C.|last=Vandal |title=Order theory and nonparametric analysis for interval censored data |publisher=University of Auckland|date=1999 |url=https://researchspace.auckland.ac.nz/handle/2292/529}}</ref> |
|||
| known_for = [[R (programming language)]] |
| known_for = [[R (programming language)]] |
||
| occupation = |
| occupation = |
||
| prizes = [[Benjamin Franklin Award (Bioinformatics)]] |
| prizes = [[Benjamin Franklin Award (Bioinformatics)]] |
||
}} |
}} |
||
'''Robert Clifford Gentleman''' (born 1959) is a Canadian statistician and [[bioinformatician]]<ref>{{Cite journal | last1 = Gentleman | first1 = R. | title = Reproducible Research: A Bioinformatics Case Study | doi = 10.2202/1544-6115.1034 | journal = Statistical Applications in Genetics and Molecular Biology | volume = 4 | year = 2005 | pmid = | |
'''Robert Clifford Gentleman''' (born 1959) is a Canadian statistician and [[bioinformatician]]<ref>{{Cite journal | last1 = Gentleman | first1 = R. | title = Reproducible Research: A Bioinformatics Case Study | doi = 10.2202/1544-6115.1034 | journal = Statistical Applications in Genetics and Molecular Biology | volume = 4 | pages = Article2 | year = 2005 | pmid = 16646837| s2cid = 17729314 | url = http://biostats.bepress.com/cgi/viewcontent.cgi?article=1002&context=bioconductor }}</ref> who is currently the founding executive director of the Center for Computational Biomedicine at [[Harvard Medical School]]. He was previously the vice president of computational biology at [[23andMe]].<ref name=23andme-pr>{{cite web|title=Bioinformatics Pioneer Robert Gentleman, Ph.D., Joins 23andMe Leadership Team|url=http://www.prnewswire.com/news-releases/bioinformatics-pioneer-robert-gentleman-phd-joins-23andme-leadership-team-300059876.html|access-date=10 August 2015}}</ref><ref name=bioit-world-23andme>{{cite web|title=Robert Gentleman on His Goals for Drug Discovery at 23andMe|url=http://www.bio-itworld.com/2015/5/19/robert-gentleman-his-goals-drug-discovery-23andme.html|access-date=10 August 2015}}</ref> Gentleman is recognized, along with [[Ross Ihaka]], as one of the originators of the [[R programming language]]<ref name=jstor1390807>{{Cite journal | last1 = Ihaka | first1 = R. | last2 = Gentleman | first2 = R. | title = R: A Language for Data Analysis and Graphics | journal = Journal of Computational and Graphical Statistics | volume = 5 | issue = 3 | pages = 299–314 | doi = 10.2307/1390807 | year = 1996 | jstor = 1390807}}</ref><ref>{{cite web |url=https://www.nytimes.com/2009/01/07/technology/business-computing/07program.html |title=R, the Software, Finds Fans in Data Analysts – NYTimes.com |author=Ashlee Vance |author-link=Ashlee Vance |date=6 January 2009 |work=The New York Times |access-date=17 April 2011}}</ref> and the [[Bioconductor]] project.<ref>{{Cite journal | last1 = Gentleman | first1 = R. C. | last2 = Carey | first2 = V. J. | last3 = Bates | first3 = D. M. | last4 = Bolstad | first4 = B. | last5 = Dettling | first5 = M. | last6 = Dudoit | first6 = S. | author6-link = Sandrine Dudoit | last7 = Ellis | first7 = B. | last8 = Gautier | first8 = L. | last9 = Ge | first9 = Y. | last10 = Gentry | first10 = J. | last11 = Hornik | first11 = K. | last12 = Hothorn | first12 = T. | last13 = Huber | first13 = W. | last14 = Iacus | first14 = S. | last15 = Irizarry | first15 = R. | last16 = Leisch | first16 = F. | last17 = Li | first17 = C. | last18 = Maechler | first18 = M. | last19 = Rossini | first19 = A. J. | last20 = Sawitzki | first20 = G. | last21 = Smith | first21 = C. | last22 = Smyth | first22 = G. | last23 = Tierney | first23 = L. | last24 = Yang | first24 = J. Y. | last25 = Zhang | first25 = J. | title = Bioconductor: Open software development for computational biology and bioinformatics | journal = Genome Biology | volume = 5 | issue = 10 | pages = R80 | doi = 10.1186/gb-2004-5-10-r80 | year = 2004 | pmid = 15461798| pmc =545600 | doi-access = free }}</ref><ref name="dblp">{{DBLP|name=Robert Gentleman}}</ref> |
||
==Education== |
==Education== |
||
Gentleman was awarded a Bachelor of Science degree in [[mathematics]] from the [[University of British Columbia]].<ref name=23andme-pr /> He was awarded a [[Ph.D.]] degree in [[ |
Gentleman was awarded a Bachelor of Science degree in [[mathematics]] from the [[University of British Columbia]].<ref name=23andme-pr /> He was awarded a [[Ph.D.]] degree in [[statistics]] from [[University of Washington]] in 1988; his thesis title was ''Exploratory methods for censored data''.<ref name="gentlemanphd">{{cite thesis |degree=PhD |first=Robert Clifford|last=Gentleman |title=Exploratory methods for censored data |publisher=University of Washington |date=1988 |author-link =Robert Gentleman (statistician)|id={{ProQuest|303589316}}}}</ref> |
||
==Research== |
==Research and career== |
||
Gentleman worked as a statistics professor at [[ |
Gentleman worked as a statistics professor at the [[University of Auckland]] in the mid-1990s, where he developed the [[R programming language]] alongside [[Ross Ihaka]].<ref name=jstor1390807 /><ref name=bioit-chief-gentleman>{{cite web|last1=Wolfson|first1=Wendy|title=A Bioinformatics Chief and a Gentleman|url=http://www.bio-itworld.com/issues/2010/may-june/gentleman.html|access-date=10 August 2015}}</ref> In 2001, he started work on the [[Bioconductor]] project to promote the development of open-source tools for bioinformatics and [[computational biology]]. In 2009, Gentleman joined the [[Genentech]] biotechnology corporation, where he worked as a senior director in bioinformatics and computational biology.<ref>{{Cite journal |
||
| last1 = Gaudet | first1 = P. |
| last1 = Gaudet | first1 = P. |
||
| last2 = Bairoch | first2 = A. | |
| last2 = Bairoch | first2 = A. | author-link2 = Amos Bairoch |
||
| last3 = Field | first3 = D. |
| last3 = Field | first3 = D. |
||
| last4 = Sansone | first4 = S. -A. |
| last4 = Sansone | first4 = S. -A. |
||
| last5 = Taylor | first5 = C. |
| last5 = Taylor | first5 = C. |
||
| last6 = Attwood | first6 = T. K. | |
| last6 = Attwood | first6 = T. K. | author-link6 = Terri Attwood |
||
| last7 = Bateman | first7 = A. | |
| last7 = Bateman | first7 = A. | author-link7 = Alex Bateman |
||
| last8 = Blake | first8 = J. A. |
| last8 = Blake | first8 = J. A. |
||
| last9 = Bult | first9 = C. J. |
| last9 = Bult | first9 = C. J. |
||
Line 44: | Line 44: | ||
| last14 = Eppig | first14 = J. T. |
| last14 = Eppig | first14 = J. T. |
||
| last15 = Galperin | first15 = M. Y. |
| last15 = Galperin | first15 = M. Y. |
||
| last16 = Gentleman | first16 = R. | |
| last16 = Gentleman | first16 = R. | author-link16 = Robert Gentleman (statistician) |
||
| last17 = Goble | first17 = C. A. | |
| last17 = Goble | first17 = C. A. | author-link17 = Carole Goble |
||
| last18 = Gojobori | first18 = T. | |
| last18 = Gojobori | first18 = T. | author-link18 = Takashi Gojobori |
||
| last19 = Hancock | first19 = J. M. |
| last19 = Hancock | first19 = J. M. |
||
| last20 = Howe | first20 = D. G. |
| last20 = Howe | first20 = D. G. |
||
Line 52: | Line 52: | ||
| last22 = Kelso | first22 = J. |
| last22 = Kelso | first22 = J. |
||
| last23 = Landsman | first23 = D. |
| last23 = Landsman | first23 = D. |
||
| last24 = Lewis | first24 = S. E. | |
| last24 = Lewis | first24 = S. E. | author-link24 = Suzanna Lewis |
||
| last25 = Karsch Mizrachi | first25 = I. |
| last25 = Karsch Mizrachi | first25 = I. |
||
| last26 = Orchard | first26 = S. |
| last26 = Orchard | first26 = S. |
||
Line 61: | Line 61: | ||
| title = Towards BioDBcore: A community-defined information specification for biological databases |
| title = Towards BioDBcore: A community-defined information specification for biological databases |
||
| doi = 10.1093/database/baq027 |
| doi = 10.1093/database/baq027 |
||
| journal = Database |
| journal = [[Database (journal)|Database]] |
||
| volume = 2011 |
| volume = 2011 |
||
| pages = |
| pages = baq027 |
||
| year = 2011 |
| year = 2011 |
||
| pmid = 21205783 |
| pmid = 21205783 |
||
| pmc =3017395 |
| pmc =3017395 |
||
⚫ | }}</ref><ref name="genentech">{{cite web |url=http://www.gene.com/gene/research/sci-profiles/bioinfo/gentleman/profile.html |title=Genentech: Research: Robert C. Gentleman |access-date=2011-04-17 |url-status=dead |archive-url=https://web.archive.org/web/20110704153255/http://www.gene.com/gene/research/sci-profiles/bioinfo/gentleman/profile.html |archive-date=2011-07-04 }} Robert C. Gentleman Senior Director: Bioinformatics & Computational Biology</ref> Gentleman joined [[personal genomics]] and [[biotechnology]] company 23andMe as vice president in April 2015,<ref name=23andme-pr /> with the goal of bringing expertise on bioinformatics and computational drug discovery to the company.<ref name=bioit-world-23andme /> Gentleman has also served on the board of the statistical software company [[Revolution Analytics]] (formerly known as REvolution Computing).<ref name=bioit-chief-gentleman /> |
||
⚫ | }}</ref><ref name="genentech">http://www.gene.com/gene/research/sci-profiles/bioinfo/gentleman/profile.html Robert C. Gentleman Senior Director: Bioinformatics & Computational Biology</ref> Gentleman joined [[personal genomics]] and [[biotechnology]] company 23andMe as vice president in April 2015,<ref name=23andme-pr /> with the goal of bringing expertise on bioinformatics and computational drug discovery to the company.<ref name=bioit-world-23andme /> Gentleman has also served on the board of the statistical software company [[Revolution Analytics]] (formerly known as REvolution Computing).<ref name=bioit-chief-gentleman /> |
||
==Awards == |
===Awards and honors === |
||
Gentleman won the [[Benjamin Franklin Award (Bioinformatics)|Benjamin Franklin Award]] in 2008, recognising his work on the R programming language, the Bioconductor project and his commitment to data and methods sharing.<ref> |
Gentleman won the [[Benjamin Franklin Award (Bioinformatics)|Benjamin Franklin Award]] in 2008, recognising his work on the R programming language, the Bioconductor project and his commitment to data and methods sharing.<ref>{{cite web|url=http://www.bioinformatics.org/franklin/|title=Benjamin Franklin Award – Bioinformatics.org|access-date=10 December 2016}}</ref> He was made a Fellow of the [[International Society for Computational Biology]] in 2014 for his contribution to computational biology and bioinformatics.<ref name=iscb-fellows>{{cite web|title=ISCB Fellows|url=http://www.iscb.org/iscb-fellows-program|access-date=10 August 2015}}</ref> |
||
He became a fellow of the [[American Statistical Association]] in 2017.<ref>{{cite web|url=http://www.amstat.org/ASA/Your-Career/Awards/ASA-Fellows-list.aspx|title=ASA Fellows list|publisher=American Statistical Association|access-date=2017-11-02|archive-url=https://web.archive.org/web/20171201042456/https://www.amstat.org/ASA/Your-Career/Awards/ASA-Fellows-list.aspx|archive-date=2017-12-01|url-status=dead}}</ref> |
|||
==References== |
==References== |
||
{{Reflist}} |
{{Reflist}} |
||
{{R (programming language)}} |
|||
{{ISCB Fellows}} |
|||
{{Authority control}} |
{{Authority control}} |
||
Line 81: | Line 83: | ||
[[Category:1959 births]] |
[[Category:1959 births]] |
||
[[Category:Living people]] |
[[Category:Living people]] |
||
[[Category: |
[[Category:Canadian bioinformaticians]] |
||
[[Category:Canadian statisticians]] |
[[Category:Canadian statisticians]] |
||
[[Category:University of Washington alumni]] |
[[Category:University of Washington alumni]] |
||
[[Category:Fellows of the American Statistical Association]] |
|||
[[Category:Fellows of the International Society for Computational Biology]] |
[[Category:Fellows of the International Society for Computational Biology]] |
||
[[Category:R (programming language)]] |
[[Category:R (programming language) people]] |
||
[[Category:Computational statisticians]] |
|||
[[Category:University of British Columbia alumni]] |
|||
[[Category:20th-century Canadian mathematicians]] |
|||
[[Category:21st-century Canadian mathematicians]] |
Latest revision as of 02:06, 29 July 2024
Robert Gentleman | |
---|---|
Born | Robert Clifford Gentleman |
Alma mater | University of Washington University of British Columbia |
Known for | R (programming language) |
Awards | Benjamin Franklin Award (Bioinformatics) |
Scientific career | |
Institutions | Genentech University of Washington Harvard Medical School University of Waterloo The University of Auckland |
Thesis | Exploratory methods for censored data (1988) |
Doctoral advisor | John James Crowley[1] |
Robert Clifford Gentleman (born 1959) is a Canadian statistician and bioinformatician[2] who is currently the founding executive director of the Center for Computational Biomedicine at Harvard Medical School. He was previously the vice president of computational biology at 23andMe.[3][4] Gentleman is recognized, along with Ross Ihaka, as one of the originators of the R programming language[5][6] and the Bioconductor project.[7][8]
Education
[edit]Gentleman was awarded a Bachelor of Science degree in mathematics from the University of British Columbia.[3] He was awarded a Ph.D. degree in statistics from University of Washington in 1988; his thesis title was Exploratory methods for censored data.[9]
Research and career
[edit]Gentleman worked as a statistics professor at the University of Auckland in the mid-1990s, where he developed the R programming language alongside Ross Ihaka.[5][10] In 2001, he started work on the Bioconductor project to promote the development of open-source tools for bioinformatics and computational biology. In 2009, Gentleman joined the Genentech biotechnology corporation, where he worked as a senior director in bioinformatics and computational biology.[11][12] Gentleman joined personal genomics and biotechnology company 23andMe as vice president in April 2015,[3] with the goal of bringing expertise on bioinformatics and computational drug discovery to the company.[4] Gentleman has also served on the board of the statistical software company Revolution Analytics (formerly known as REvolution Computing).[10]
Awards and honors
[edit]Gentleman won the Benjamin Franklin Award in 2008, recognising his work on the R programming language, the Bioconductor project and his commitment to data and methods sharing.[13] He was made a Fellow of the International Society for Computational Biology in 2014 for his contribution to computational biology and bioinformatics.[14] He became a fellow of the American Statistical Association in 2017.[15]
References
[edit]- ^ Robert Gentleman at the Mathematics Genealogy Project
- ^ Gentleman, R. (2005). "Reproducible Research: A Bioinformatics Case Study". Statistical Applications in Genetics and Molecular Biology. 4: Article2. doi:10.2202/1544-6115.1034. PMID 16646837. S2CID 17729314.
- ^ a b c "Bioinformatics Pioneer Robert Gentleman, Ph.D., Joins 23andMe Leadership Team". Retrieved 10 August 2015.
- ^ a b "Robert Gentleman on His Goals for Drug Discovery at 23andMe". Retrieved 10 August 2015.
- ^ a b Ihaka, R.; Gentleman, R. (1996). "R: A Language for Data Analysis and Graphics". Journal of Computational and Graphical Statistics. 5 (3): 299–314. doi:10.2307/1390807. JSTOR 1390807.
- ^ Ashlee Vance (6 January 2009). "R, the Software, Finds Fans in Data Analysts – NYTimes.com". The New York Times. Retrieved 17 April 2011.
- ^ Gentleman, R. C.; Carey, V. J.; Bates, D. M.; Bolstad, B.; Dettling, M.; Dudoit, S.; Ellis, B.; Gautier, L.; Ge, Y.; Gentry, J.; Hornik, K.; Hothorn, T.; Huber, W.; Iacus, S.; Irizarry, R.; Leisch, F.; Li, C.; Maechler, M.; Rossini, A. J.; Sawitzki, G.; Smith, C.; Smyth, G.; Tierney, L.; Yang, J. Y.; Zhang, J. (2004). "Bioconductor: Open software development for computational biology and bioinformatics". Genome Biology. 5 (10): R80. doi:10.1186/gb-2004-5-10-r80. PMC 545600. PMID 15461798.
- ^ Robert Gentleman at DBLP Bibliography Server
- ^ Gentleman, Robert Clifford (1988). Exploratory methods for censored data (PhD thesis). University of Washington. ProQuest 303589316.
- ^ a b Wolfson, Wendy. "A Bioinformatics Chief and a Gentleman". Retrieved 10 August 2015.
- ^ Gaudet, P.; Bairoch, A.; Field, D.; Sansone, S. -A.; Taylor, C.; Attwood, T. K.; Bateman, A.; Blake, J. A.; Bult, C. J.; Cherry, J. M.; Chisholm, R. L.; Cochrane, G.; Cook, C. E.; Eppig, J. T.; Galperin, M. Y.; Gentleman, R.; Goble, C. A.; Gojobori, T.; Hancock, J. M.; Howe, D. G.; Imanishi, T.; Kelso, J.; Landsman, D.; Lewis, S. E.; Karsch Mizrachi, I.; Orchard, S.; Ouellette, B. F. F.; Ranganathan, S.; Richardson, L.; Rocca-Serra, P. (2011). "Towards BioDBcore: A community-defined information specification for biological databases". Database. 2011: baq027. doi:10.1093/database/baq027. PMC 3017395. PMID 21205783.
- ^ "Genentech: Research: Robert C. Gentleman". Archived from the original on 2011-07-04. Retrieved 2011-04-17. Robert C. Gentleman Senior Director: Bioinformatics & Computational Biology
- ^ "Benjamin Franklin Award – Bioinformatics.org". Retrieved 10 December 2016.
- ^ "ISCB Fellows". Retrieved 10 August 2015.
- ^ "ASA Fellows list". American Statistical Association. Archived from the original on 2017-12-01. Retrieved 2017-11-02.
- 1959 births
- Living people
- Canadian bioinformaticians
- Canadian statisticians
- University of Washington alumni
- Fellows of the American Statistical Association
- Fellows of the International Society for Computational Biology
- R (programming language) people
- Computational statisticians
- University of British Columbia alumni
- 20th-century Canadian mathematicians
- 21st-century Canadian mathematicians