Haplogroup D-M174: Difference between revisions

Haplogroup D-M174
Haplogroup D-M174
Possible time of origin	50,000-60,000 years BP; ; 65,200 [95% CI 62,100 <-> 68,300] ybp
Coalescence age	46,300 [95% CI 43,500 <-> 49,100] ybp
Possible place of origin	Asia (probably South Asia)
Ancestor	D (CTS3946)
Descendants	D1a (CTS11577); D1a1 (Z27276); D1a2a (M55); D1a2b (Y34637); D1a2 (Z3660); D1a2a (M55); D1a2b (Y34637); D1b (L1378)
Defining mutations	M174, IMS-JST021355, PAGES00003

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Haplogroup D1 or D-M174 is a subclade of haplogroup D-CTS3946. This male haplogroup is found primarily in East Asia, Magar-ethnic Nepal and the Andaman Islands. It is also found regularly with lower frequency in Central Asia, Siberia and Mainland Southeast Asia, and, more rarely, in Europe and the Middle East.

Origins

Haplogroup D-M174 is believed to have originated in Asia some 60,000 years ago.^[2]^[4] While haplogroup D-M174, along with haplogroup E, contains the distinctive YAP polymorphism—which indicates their closer ancestry than C—no haplogroup D-M174 chromosomes have been found outside of Asia.^[4] Haplogroup D1 is also often found in Southern Asia's populations.^[7]

Several studies (Hammer et al. 2006, Shinoda 2008, Matsumoto 2009) suggested that paternal haplogroup D-M174 originated s in Central Asia.^[8]

A 2017 study by Mondal et al. finds that the Riang people (a Tibeto-Burmese population) and the Andamanese share the same D clade (D1a3, also known as D1a2b) and have their closest lineages with other clades in East Asia. The Jarawa and Onge shared D1a2b with each other within the last ~7,000 years. The East Asian D1a2b diverged from the Japanese D1a2a lineage ~53,000 years ago. The authors conclude: "This strongly suggests that haplogroup D does not indicate a separate ancestry for Andamanese populations. Rather, haplogroup D was part of the standing variation carried by the Eastern OOA expansion, and later lost from most of the populations except in Andaman and partially in Japan and Tibet".^[9]

A 2019 study by Haber et al. showed that Haplogroup D-M174 originated in Central Asia and evolved as it migrated to different directions of the continent. One group of population migrated to Siberia, others to Japan and Tibet, and another group migrated to the Andaman islands.^[10]

A 2020 genetic study by Hallast et al. on ancient and modern haplogroups using a phylogenetic analysis of haplogroup C, D, and FT sequences—including very rare deep-rooting lineages such as D0/D2, a divergent D lineage not belonging to D-M174—argues that the initial splits within haplogroup CT (an ancestor of DE) occurred in Africa. It also argues that phylogeographic analyses of ancient and present-day non-African Y chromosomes all point to East/Southeast Asia as the origin of all known surviving non-African male lineages (apart from recent migrants) soon after an initial 70,000–55,000-year-ago migration from Africa of basal haplogroup D and other basal Y-lineages. It argues that these lineages then rapidly expanded across Eurasia, diversified in Southeast Asia, and expanded westward around 55,000–50,000 years ago, replacing other local lineages within Eurasia; haplogroup D (as D-M174) then underwent rapid expansions within Eastern Eurasian populations and consists of five branches that formed about 45,000 years ago. The study finds that these haplogroups currently have their greatest diversity in Eastern Eurasia (East/Southeast Asia). Tibeto-Burmese populations of East and Southeast Asia were found to have the highest amount of diversity.^[11]

Overview

Haplogroup D-M174 is found today with high frequency among populations in Tibet, Magar-ethnic Nepal, northern Myanmar, Qinghai, the Japanese archipelago, and the Andaman Islands, though curiously not as much in the rest of India. The Ainu people of Japan and various Tibeto-Burmese people (such as the Tripuri people) are notable for possessing almost exclusively haplogroup D-M174 chromosomes. Haplogroup D-M174 chromosomes are also found at low to moderate frequencies among the Bai, Dai, Han, Hui, Manchu, Miao, Tujia, Xibe, Yao, and Zhuang peoples of China and among several minority populations of Sichuan and Yunnan that speak Tibeto-Burman languages and reside in close proximity to the Tibetans, such as the Jingpo, Jino, Mosuo, Naxi, Pumi, Qiang, and Yi.^[12]

Haplogroup D is also found in populations in China proper and in Korea, but with much lower frequency than in Tibet and Japan. A study published in 2011 found D-M174 in 2.49% (43/1729) of Han Chinese males, with frequencies tending to be higher than average toward the north and west of the country (8.9% of Shaanxi Han, 5.9% of Gansu Han, 4.4% of Yunnan Han, 3.7% of Guangxi Han, 3.3% of Hunan Han, and 3.2% of Sichuan Han).^[13] In another study of Han Chinese Y-DNA published in 2011, haplogroup D-M174 was observed in 1.94% (7/361) of a sample of unrelated Han Chinese male volunteers at Fudan University in Shanghai, with the origins of most of the volunteers being traced back to East China (Jiangsu, Zhejiang, Shanghai, and Anhui).^[14]

In Korea, haplogroup D-M174 was observed in 3.8% (5/133) of a sample from Daejeon,^[15] 3.5% (3/85) of a sample from Seoul,^[16] 3.3% (3/90) of a sample from Jeolla,^[17] 2.4% (2/84) of a sample from Gyeongsang,^[17] 2.3% (13/573) of another sample from Seoul,^[15] 1.4% (1/72) of a sample from Chungcheong,^[17] 1.1% (1/87) of a sample from Jeju,^[17] and 0.9% (1/110) of a third sample from Seoul-Gyeonggi.^[17] In other studies, haplogroup D-M174 has been observed in 6.7% (3/45)^[18] and 4.0% (3/75)^[19] of samples from Korea without any further specification of the area of sampling.

Little high-resolution data regarding the phylogenetic position of Han Chinese and Korean members of Y-DNA haplogroup D has been published, but the available data suggests that most Han Chinese members of haplogroup D should belong to clades found frequently among Tibetans (especially the D-M15 clade, also found among speakers of some Lolo-Burmese and Hmong-Mien languages), whereas most Korean members of haplogroup D should belong to the D-M55 clade, which is found frequently among Ainu, Ryukyuan, and Japanese people.^[19]^[17]^[3]

Haplogroup D Y-DNA has been found (albeit with low frequency) among modern populations of the Eurasian steppe, such as:

Southern Altaians (6/96 = 6.3% D-M174(xM15),^[20] 6/120 = 5.0% D-P47^[21])
Kazakhs (1/54 = 1.9% D-M174,^[18] 6/1294 = 0.5% D^[22])
Nogais (4/76 = 5.3% D-M174 Kara Nogai,^[23] 1/87 = 1.1% D-M174 Kuban Nogai^[23])
Khalkhas (1/24 = 4.2% D-M174,^[18] 3/85 = 3.5% D-M174,^[16] 2/149 D-M15 + 2/149 D-P47 = 4/149 = 2.7% D-M174 total^[19])
Zakhchin (2/60 = 3.3% D-M174^[16])
Uriankhai (1/60 = 1.7% D-M174^[16])
Kalmyks (5/426 = 1.2% D-M174^[24])

It has also been found among linguistically similar (Turkic- or Mongolic-speaking) modern populations of the desert and oasis belt south of the steppe, such as Yugurs, Bao’an, Monguors, Uyghurs, and Uzbeks. In commercial testing, members have been found as far west as Romania in Europe and Iraq in Western Asia.^[25]

Unlike haplogroup C-M217, haplogroup D-M174 is not found in the New World; it is not present in any modern Native American (North, Central, or South) populations. While it is possible that it traveled to the New World like haplogroup C-M217, those lineages apparently became extinct.

Haplogroup D-M174 is remarkable for its rather extreme geographic differentiation, with a distinct subset of chromosomes being found exclusively in each of the populations that contains a large percentage of individuals whose Y-chromosomes belong to haplogroup D-M174: haplogroup D-M15 among Tibetans, as well as other East/Southeast Asian populations that display low frequencies of haplogroup D-M174 Y-chromosomes; haplogroup D-M55 among the various populations of the Japanese archipelago and with low frequency among Koreans; and haplogroup D-P99 among the inhabitants of Tibet and some other parts of central Eurasia (e.g. Mongolia^[26] and the Altai^[19]^[20]^[21]). D-M174* without positive-tested subclades D-M15 or D-M55 is found at high frequencies among Andaman Islanders, and recently an Andamanese subclade was found to be D-Y34637 (D1a2b).^[3] Another type (or types) of paragroup D-M174* without positive-tested subclades of D-M15, D-P47, or D-M55 is found at a very low frequency among the Turkic and Mongolic populations of Central Asia, amounting to no more than 1% in total. This apparently ancient diversification of haplogroup D-M174 suggests that it may perhaps be better characterized as a "super-haplogroup" or "macro-haplogroup".

In one study, the frequency of haplogroup D-M174 without positive-tested subclades found among Thais was 10%.^[2] Su et al. (2000) found DE-YAP/DYS287(xM15) in 11.1% (5/45) of a set of three samples from Thailand—including 20% (4/20) North Thai, 20% (1/5) So, and 0% (0/20) Northeast Thai—and in 16.7% (1/6) of a sample from Guam.^[27] Meanwhile, the authors found D-M15 in 15% of a pair of samples of Yao, including 30% (3/10) Yao Jinxiu and 0% (0/10) Yao Nandan; 14.3% (2/14) of a sample of Yi; 3.8% (1/26) of a sample of Cambodians; and 3.6% (1/28) of a sample of Zhuang.^[27] Dong et al. (2002) found DE-YAP Y-chromosomes in 12.5% (2/16) of a sample of Jingpo from Luxi City, Yunnan, 10.0% (2/20) of a sample of Dai from Luxi City, and 1.82% (1/55) of a sample of Nu from Gongshan and Fugong, Yunnan.^[28]

Distribution and subclades

The haplogroup D-M174 Y-chromosomes that are found among Tibeto-Burman populations as well as people of the Japanese archipelago belong to haplogroup D1a2b, D1a2a, and D1a1. D-M55 (D1a2a) is particularly distinctive, bearing a complex of at least five individual mutations along an internal branch of the haplogroup D-M174 phylogeny, thus distinguishing it clearly from the other haplogroup D-M174 chromosomes that are found among Tibetans and Andaman Islanders and providing evidence that Y-chromosome haplogroup D-M55 was the modal haplogroup in the ancestral population that developed the prehistoric Jōmon culture in the Japanese islands.

It is suggested that the majority of D-M174 Y-chromosome carriers migrated from Central Asia to East Asia. One group migrated to the Andaman Islands, thus forming or helping to form the Andamanese people. Another group stayed in modern Tibet and southern China (today Tibeto-Burman peoples), and a third group migrated to Japan, possibly via the Korean Peninsula (pre-Jōmon people).^[2]^[19]

D-Z27276 (D1a1)

Haplogroup D-Z27276 is the common ancestor of D-M15 and D-P99, which are common in Tibet (China).

D-M15 (D1a1a)

D-M15 was first reported to have been found in a sample from Cambodia and Laos (1/18 = 5.6%) and in a sample from Japan (1/23 = 4.3%) in a preliminary worldwide survey of Y-DNA variation in extant human populations.^[29]

Subsequently, Y-DNA belonging to haplogroup D-M15 has been found frequently among Tibeto-Burman-speaking populations of Southwestern China (including approximately 23% of Qiang,^[2]^[30]^[31] approximately 12.5% of Tibetans,^[2] and approximately 9% of Yi^[2]^[32]), and among Yao people inhabiting northeastern Guangxi (6/31 = 19.4% Lowland Yao, 5/41 = 12.2% Native Mien, 3/41 = 7.3% Lowland Kimmun),^[33] with a moderate distribution throughout Central Asia, East Asia, and continental Southeast Asia (Indochina).^[2]

A study published in 2011 found D-M15 in 7.8% (4/51) of a sample of Hmong Daw and in 3.4% (1/29) of a sample of Xinhmul from northern Laos.^[33]

D-P47 (D1a1b1)

This subclade is found with high frequency among Pumi,^[2] Naxi,^[2] and Tibetans,Lu D, Lou H, Yuan K, Wang X, Wang Y, Zhang C, et al. (September 2016). "Ancestral Origins and Genetic History of Tibetan Highlanders". American Journal of Human Genetics. 99 (3): 580–594. doi:10.1016/j.ajhg.2016.07.002. PMC 5011065. PMID 27569548.^[2] with a moderate distribution in Central Asia.^[2] According to one study, Tibetans have a frequency of about 41.31% of haplogroup D-P47.^[2]

D-Z3660 (D1a2)

For about 7,000 years, the natives of the Andaman Islands shared a common ancestry with each other. The closest lineage to the Andamanese is the Japanese haplogroup D, with which it has a very old relationship, dating back to about 53,000 years.^[9]

D-M55 (D1a2a)

Previously known as D-M55, D-M64.1/Page44.1 (D1a2a) is found with high frequency among Ainu^[34] and with medium frequency among Japanese^[35] and Ryukyuans.^[35]

Kim et al. (2011) found haplogroup D-M55 in 2.0% (1/51) of a sample of Beijing Han and in 1.6% (8/506) of a pool of samples from South Korea, including 3.3% (3/90) from the Jeolla region, 2.4% (2/84) from the Gyeongsang region, 1.4% (1/72) from the Chungcheong region, 1.1% (1/87) from the Jeju region, 0.9% (1/110) from the Seoul-Gyeonggi region, and 0% (0/63) from the Gangwon region.^[17] Hammer et al. (2006) found haplogroup D-P37.1 in 4.0% (3/75) of a sample from South Korea.^[19]

D-M116.1, which is a subclade of D-M55, has been observed in one individual in a sample from Micronesia (n=17) according to the supplementary material of a study published in 2006.^[19] D-M116.1 also has been observed in one individual in a pool of samples from West Timor (n=497); the pertinent individual is from Umaklaran, located on the north side of the island of Timor near the border with East Timor.^[36]

According to Mitsuru Sakitani, haplogroup D1 arrived from Central Asia to northern Kyushu via the Altai Mountains and the Korean Peninsula more than 40,000 years ago, and haplogroup D-M55 (D1a2a) was born in the Japanese archipelago.^[37]

D-Y34637 (D1a2b)

D1a2b (formerly one of D*) is found at high frequencies among Andaman Islanders,^[2] especially Onge (23/23 = 100%) and Jarawa (4/4 = 100%).^[38]^[3]

D-L1378 (D1b)

D1b (L1378, M226.2) has been found in commercial testing in two families from Mactan Island in the Cebu region of the Philippines, in the ethnic Rade people from Vietnam as well as an ancient sample from Malaysia.^[39]

D-M174*

D-M174 (xM15, P99, M55) is found in some Tibetan minority tribes in Northeast India (among whom rates vary from 0% to 65%).^[5]^[40]^[41]^[42]

The basal D-M174 (xM15, P47, M55) has been found in approximately 5% of Altaians.^[19] Kharkov et al. found haplogroup D*(xD-M15) in 6.3% (6/96) of a pool of samples of Southern Altaians from three different localities, particularly in Kulada (5/46 = 10.9%) and Kosh-Agach (1/7 = 14%), though they did not test for any marker of the subclade D-M55 or D-P99. Kharkov et al. also reported finding haplogroup DE-M1(xD-M174) Y-DNA in one Southern Altaian individual from Beshpeltir (1/43 = 2.3%).^[20]

In 2023 found in one Individual in North America, Ramon Moses, Lacrosse, Wi, USA. D-M174.^[43]

Phylogenetics

Phylogenetic history

Prior to 2002, there were in academic literature at least seven naming systems for the Y-chromosome phylogenetic tree. This led to considerable confusion. In 2002, major research groups came together and formed the Y Chromosome Consortium (YCC). They published a joint paper that created a single new tree. Later, a group of citizen scientists with an interest in population genetics and genealogy formed a working group to create an amateur tree. The table below brings together all of these works at the point of the landmark 2002 YCC tree. This allows a researcher reviewing older published literature to quickly move between nomenclatures.

YCC 2002/2008 (Shorthand)	(α)	(β)	(γ)	(δ)	(ε)	(ζ)	(η)	YCC 2002 (Longhand)	YCC 2005 (Longhand)	YCC 2008 (Longhand)	YCC 2010r (Longhand)	ISOGG 2006	ISOGG 2007	ISOGG 2008	ISOGG 2009	ISOGG 2010	ISOGG 2011	ISOGG 2012
D-M174	*	*	*	*	*	*	*	*	D	D	D	D	D	D	D	D	D	D
D-M15	4	IV	3G	12	Eu5	H3	B	D1	D1	D1	D1	D1	D1	D1	D1	D1	D1	D1
D-M55	*	*	*	*	*	*	*	*	D2	D2	D2	D2	D2	D2	D2	D2	D2	D2
D-P12	4	IV	3G	11	Eu5	H2	B	D2a	D2a	D2a1a1	D2a1a1	D2	D2	D2a1a1	D2a1a1	D2a1a1	removed	removed
D-M116.1	4	IV	3G	11	Eu5	H2	B	D2b*	D2a	D2a	D2a	D2a	D2a	D2a	D2a	D2a	removed	removed
D-M125	4	IV	3G	11	Eu5	H2	B	D2b1	D2a1	D2a1	D2a1	D2a1	D2a1	D2a1	D2a1	D2a1	D2a1	D2a1
D-M151	4	IV	3G	11	Eu5	H2	B	D2b2	D2a1	D2a2	D2a2	D2a2	D2a2	D2a2	D2a2	D2a2	D2a2	D2a2

Research publications

The following research teams, per their publications, were represented in the creation of the YCC tree.

α Jobling and Tyler-Smith (2000)^[44] and Kalaydjieva (2001)^[45]
β Underhill (2000)^[46]
γ Hammer (2001)^[47]
δ Karafet (2001)^[48]
ε Semino (2000)^[49]
ζ Su (1999)^[50]
η Capelli (2001)^[51]

Phylogenetic trees

By ISOGG tree(Version 14.151):^[52]

DE (YAP) Nigeria, Guinea-Bissau, Caribbean, Tibet
- D (CTS3946)
  - D1 (M174/Page30, IMS-JST021355) East Asia, Andaman Islands, Central Asia, Mainland Southeast Asia
    - D1a (CTS11577)　
      - D1a1 (F6251/Z27276)
        D1a1a (M15) Tibet, Altai Republic
        
        D1a1b (P99) Tibet, Mongol, Central Asia
      - D1a2(Z3660)
        D1a2a (M64.1/Page44.1, M55) Japan(Yamato people、Ryukyuan people、Ainu people)
        
        D1a2b (Y34637) Andaman Islands(Onge people、Jarawa people)
    - D1b (L1378) Philippines^[53]
  - D2 (A5580.2) Nigeria, Saudi Arabia, Syria, United States, Yemen

References

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^ "Y-DNA D Haplogroup Project". Family Tree DNA.
^ Di Cristofaro J, Pennarun E, Mazières S, Myres NM, Lin AA, Temori SA, et al. (2013). "Afghan Hindu Kush: where Eurasian sub-continent gene flows converge". PLOS ONE. 8 (10): e76748. Bibcode:2013PLoSO...876748D. doi:10.1371/journal.pone.0076748. PMC 3799995. PMID 24204668.
^ ^a ^b Su B, Jin L, Underhill P, Martinson J, Saha N, McGarvey ST, et al. (July 2000). "Polynesian origins: insights from the Y chromosome". Proceedings of the National Academy of Sciences of the United States of America. 97 (15): 8225–8228. Bibcode:2000PNAS...97.8225S. doi:10.1073/pnas.97.15.8225. PMC 26928. PMID 10899994.
^ Dong Y, Shi H, Li W, Yang J, Zeng W, Li K, et al. (September 2002). "怒江大峡谷及下游地区7个云南少数民族YAP位点的多态性研究----中国科学院古脊椎动物与古人类研究所" [Polymorphism of YAP locus in seven ethnic minorities in the Nujiang Grand Canyon and downstream areas of Yunnan.]. Acta Anthropologica Sinica. 21 (3): 250. Retrieved 2024-09-04.
^ Underhill PA, Shen P, Lin AA, Jin L, Passarino G, Yang WH, et al. (November 2000). "Y chromosome sequence variation and the history of human populations". Nature Genetics. 26 (3): 358–61. doi:10.1038/81685. PMID 11062480. S2CID 12893406.
^ Xue Y, Zerjal T, Bao W, Zhu S, Shu Q, Xu J, et al. (April 2006). "Male demography in East Asia: a north-south contrast in human population expansion times". Genetics. 172 (4): 2431–9. doi:10.1534/genetics.105.054270. PMC 1456369. PMID 16489223.
^ Wang CC, Wang LX, Shrestha R, Zhang M, Huang XY, Hu K, et al. (2014). "Genetic structure of Qiangic populations residing in the western Sichuan corridor". PLOS ONE. 9 (8): e103772. Bibcode:2014PLoSO...9j3772W. doi:10.1371/journal.pone.0103772. PMC 4121179. PMID 25090432.
^ Wen B, Xie X, Gao S, Li H, Shi H, Song X, et al. (May 2004). "Analyses of genetic structure of Tibeto-Burman populations reveals sex-biased admixture in southern Tibeto-Burmans". American Journal of Human Genetics. 74 (5): 856–65. doi:10.1086/386292. PMC 1181980. PMID 15042512.
^ ^a ^b Cai X, Qin Z, Wen B, Xu S, Wang Y, Lu Y, et al. (2011). "Human migration through bottlenecks from Southeast Asia into East Asia during Last Glacial Maximum revealed by Y chromosomes". PLOS ONE. 6 (8): e24282. Bibcode:2011PLoSO...624282C. doi:10.1371/journal.pone.0024282. PMC 3164178. PMID 21904623.
^ Tajima A, Hayami M, Tokunaga K, Juji T, Matsuo M, Marzuki S, et al. (2004). "Genetic origins of the Ainu inferred from combined DNA analyses of maternal and paternal lineages". Journal of Human Genetics. 49 (4): 187–93. doi:10.1007/s10038-004-0131-x. PMID 14997363.
^ ^a ^b Sato Y, Shinka T, Ewis AA, Yamauchi A, Iwamoto T, Nakahori Y (2014). "Overview of genetic variation in the Y chromosome of modern Japanese males". Anthropological Science. 122 (3): 131–136. doi:10.1537/ase.140709.
^ Tumonggor MK, Karafet TM, Downey S, Lansing JS, Norquest P, Sudoyo H, et al. (September 2014). "Isolation, contact and social behavior shaped genetic diversity in West Timor". Journal of Human Genetics. 59 (9): 494–503. doi:10.1038/jhg.2014.62. PMC 4521296. PMID 25078354.
^ Sakiya M (2009). DNA・考古・言語の学際研究が示す新・日本列島史 [A New History of the Japanese Archipelago Revealed by Interdisciplinary Research on DNA, Archaeology, and Language] (in Japanese). Benseishuppan.
^ Thangaraj K, Singh L, Reddy AG, Rao VR, Sehgal SC, Underhill PA, et al. (January 2003). "Genetic affinities of the Andaman Islanders, a vanishing human population". Current Biology. 13 (2): 86–93. doi:10.1016/S0960-9822(02)01336-2. PMID 12546781. S2CID 12155496.
^ "FamilyTreeDNA". Y-DNA D Haplogroup Project.
^ Cordaux R, Weiss G, Saha N, Stoneking M (August 2004). "The northeast Indian passageway: a barrier or corridor for human migrations?". Molecular Biology and Evolution. 21 (8): 1525–33. doi:10.1093/molbev/msh151. PMID 15128876.
^ Chandrasekar A, Saheb SY, Gangopadyaya P, Gangopadyaya S, Mukherjee A, Basu D, et al. (2007). "YAP insertion signature in South Asia". Annals of Human Biology. 34 (5): 582–6. doi:10.1080/03014460701556262. PMID 17786594. S2CID 11860142.
^ Reddy BM, Langstieh BT, Kumar V, Nagaraja T, Reddy AN, Meka A, et al. (November 2007). "Austro-Asiatic tribes of Northeast India provide hitherto missing genetic link between South and Southeast Asia". PLOS ONE. 2 (11): e1141. Bibcode:2007PLoSO...2.1141R. doi:10.1371/journal.pone.0001141. PMC 2065843. PMID 17989774.
^ 23andme raw data
^ Jobling MA, Tyler-Smith C (August 2000). "New uses for new haplotypes the human Y chromosome, disease and selection". Trends in Genetics. 16 (8): 356–362. doi:10.1016/S0168-9525(00)02057-6. PMID 10904265.
^ Kalaydjieva L, Calafell F, Jobling MA, Angelicheva D, de Knijff P, Rosser ZH, et al. (February 2001). "Patterns of inter- and intra-group genetic diversity in the Vlax Roma as revealed by Y chromosome and mitochondrial DNA lineages". European Journal of Human Genetics. 9 (2): 97–104. doi:10.1038/sj.ejhg.5200597. PMID 11313742.
^ Underhill PA, Shen P, Lin AA, Jin L, Passarino G, Yang WH, et al. (November 2000). "Y chromosome sequence variation and the history of human populations". Nature Genetics. 26 (3): 358–361. doi:10.1038/81685. PMID 11062480.
^ Hammer MF, Karafet TM, Redd AJ, Jarjanazi H, Santachiara-Benerecetti S, Soodyall H, et al. (July 2001). "Hierarchical patterns of global human Y-chromosome diversity". Molecular Biology and Evolution. 18 (7): 1189–1203. doi:10.1093/oxfordjournals.molbev.a003906. PMID 11420360.
^ Karafet T, Xu L, Du R, Wang W, Feng S, Wells RS, et al. (September 2001). "Paternal population history of East Asia: sources, patterns, and microevolutionary processes". American Journal of Human Genetics. 69 (3): 615–628. doi:10.1086/323299. PMC 1235490. PMID 11481588.
^ Semino O, Passarino G, Oefner PJ, Lin AA, Arbuzova S, Beckman LE, et al. (November 2000). "The genetic legacy of Paleolithic Homo sapiens sapiens in extant Europeans: a Y chromosome perspective". Science. 290 (5494): 1155–1159. Bibcode:2000Sci...290.1155S. doi:10.1126/science.290.5494.1155. PMID 11073453.
^ Su B, Xiao J, Underhill P, Deka R, Zhang W, Akey J, et al. (December 1999). "Y-Chromosome evidence for a northward migration of modern humans into Eastern Asia during the last Ice Age". American Journal of Human Genetics. 65 (6): 1718–1724. doi:10.1086/302680. PMC 1288383. PMID 10577926.
^ Capelli C, Wilson JF, Richards M, Stumpf MP, Gratrix F, Oppenheimer S, et al. (February 2001). "A predominantly indigenous paternal heritage for the Austronesian-speaking peoples of insular Southeast Asia and Oceania". American Journal of Human Genetics. 68 (2): 432–443. doi:10.1086/318205. PMC 1235276. PMID 11170891.
^ Y-DNA Haplogroup D and its Subclades - 2019
^ Y-DNA Haplogroup D and its Subclades - 2014

External links

Atlas of the Human Journey: Genetic Markers, Haplogroup D-M174 (M174), from The Genographic Project at National Geographic
Famous dna of Japan Archived 2024-02-02 at the Wayback Machine

[vanOven2014-54] Van Oven M, Van Geystelen A, Kayser M, Decorte R, Larmuseau HD (2014). "Seeing the wood for the trees: a minimal reference phylogeny for the human Y chromosome". Human Mutation. 35 (2): 187–91. doi:10.1002/humu.22468. PMID 24166809. S2CID 23291764.

[ISOGG2015-55] International Society of Genetic Genealogy (ISOGG; 2015), Y-DNA Haplogroup Tree 2015. (Access date: 1 February 2015.)

[A0-T-56] Haplogroup A0-T is also known as A-L1085 (and previously as A0'1'2'3'4).

[A1-57] Haplogroup A1 is also known as A1'2'3'4.

[F-Y27277-58] F-Y27277, sometimes known as F2'4, is both the parent clade of F2 and F4 and a child of F-M89.

[LT-59] Haplogroup LT (L298/P326) is also known as Haplogroup K1.

[K2-60] Between 2002 and 2008, Haplogroup T-M184 was known as "Haplogroup K2". That name has since been re-assigned to K-M526, the sibling of Haplogroup LT.

[K2b-61] Haplogroup K2b (M1221/P331/PF5911) is also known as Haplogroup MPS.

[K2b1-62] Haplogroup K2b1 (P397/P399) is also known as Haplogroup MS, but has a broader and more complex internal structure.

[P-63] Haplogroup P (P295) is also klnown as K2b2.

[K-M2313-64] K-M2313*, which as yet has no phylogenetic name, has been documented in two living individuals, who have ethnic ties to India and South East Asia. In addition, K-Y28299, which appears to be a primary branch of K-M2313, has been found in three living individuals from India. See: Poznik op. cit.; YFull YTree v5.08, 2017, "K-M2335", and; PhyloTree, 2017, "Details of the Y-SNP markers included in the minimal Y tree" (Access date of these pages: 9 December 2017)

[S-65] Haplogroup S, as of 2017, is also known as K2b1a. (Previously the name Haplogroup S was assigned to K2b1a4.)

[M-66] Haplogroup M, as of 2017, is also known as K2b1b. (Previously the name Haplogroup M was assigned to K2b1d.)

[ISOGG-1] "Y-DNA Haplogroup D-M174 and its Subclades - 2017".

[Shi2008-2] ^ ^a ^b ^c ^d ^e ^f ^g ^h ⁱ ^j ^k ^l ^m ⁿ ^o Shi H, Zhong H, Peng Y, Dong YL, Qi XB, Zhang F, et al. (October 2008). "Y chromosome evidence of earliest modern human settlement in East Asia and multiple origins of Tibetan and Japanese populations". BMC Biology. 6: 45. doi:10.1186/1741-7007-6-45. PMC 2605740. PMID 18959782.

[Y-Full-3] "D YTree". YFull. Archived from the original on 2019-08-31. Retrieved 2018-03-30.

[Karafet2008-4] Karafet TM, Mendez FL, Meilerman MB, Underhill PA, Zegura SL, Hammer MF (May 2008). "New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree". Genome Research. 18 (5): 830–8. doi:10.1101/gr.7172008. PMC 2336805. PMID 18385274.

[SuBing2000-5] Su B, Xiao C, Deka R, Seielstad MT, Kangwanpong D, Xiao J, et al. (December 2000). "Y chromosome haplotypes reveal prehistorical migrations to the Himalayas". Human Genetics. 107 (6): 582–90. doi:10.1007/s004390000406. PMID 11153912. S2CID 36788262.

[6] Xu D, Li H (5 May 2017). Languages and Genes in Northwestern China and Adjacent Regions. Springer. p. 25. ISBN 978-981-10-4169-3. "For the origin of haplogroup D, Chandrasekar et al. (2007) suggested that the CT-M168 gave rise to the YAP insertion and D-M174 mutation in South Asia based on their findings of the YAP insertion in northeast Indian tribes and the D-M174 in South Asia and the D-M174 in Andaman islanders."

[7] Guo Y, Xia Z, Cui W, Chen C, Jin X, Zhu B (May 2020). "Joint Genetic Analyses of Mitochondrial and Y-Chromosome Molecular Markers for a Population from Northwest China". Genes. 11 (5): 564. doi:10.3390/genes11050564. PMC 7290686. PMID 32443545.

[8] Matsumoto H (February 2009). "The origin of the Japanese race based on genetic markers of immunoglobulin G". Proceedings of the Japan Academy. Series B, Physical and Biological Sciences. 85 (2): 69–82. Bibcode:2009PJAB...85...69M. doi:10.2183/pjab.85.69. PMC 3524296. PMID 19212099.

[:23-9] Mondal M, Bergström A, Xue Y, Calafell F, Laayouni H, Casals F, et al. (May 2017). "Y-chromosomal sequences of diverse Indian populations and the ancestry of the Andamanese". Human Genetics. 136 (5): 499–510. doi:10.1007/s00439-017-1800-0. hdl:10230/34399. PMID 28444560. S2CID 3725426. In contrast, the Riang (Tibeto-Burman-speaking) and Andamanese have their nearest neighbour lineages in East Asia. The Jarawa and Onge shared haplogroup D lineages with each other within the last ~7000 years, but had diverged from Japanese haplogroup D Y-chromosomes ~53000 years ago, most likely by a split from a shared ancestral population.

[10] Hallast P, Agdzhoyan A, Balanovsky O, Xue Y, Tyler-Smith C (February 2021). "A Southeast Asian origin for present-day non-African human Y chromosomes". Human Genetics. 140 (2): 299–307. doi:10.1007/s00439-020-02204-9. PMC 7864842. PMID 32666166.

[11] Hallast P, Agdzhoyan A, Balanovsky O, Xue Y, Tyler-Smith C (February 2021). "A Southeast Asian origin for present-day non-African human Y chromosomes". Human Genetics. 140 (2): 299–307. doi:10.1007/s00439-020-02204-9. PMC 7864842. PMID 32666166.

[12] "Y染色体单倍群D在東亞的分布及其意義" [Distribution and significance of Y chromosome haplogroup D in East Asia] (PDF) (in Chinese). Archived from the original (PDF) on 3 March 2016.

[Zhong2011-13] Zhong H, Shi H, Qi XB, Duan ZY, Tan PP, Jin L, et al. (2011). "Extended Y Chromosome Investigation Suggests Postglacial Migrations of Modern Humans into East Asia via the Northern Route". Mol. Biol. Evol. 28 (1): 717–727. doi:10.1093/molbev/msq247. PMID 20837606.

[Yan2011-14] Yan S, Wang CC, Li H, Li SL, Jin L, et al. (The Genographic Consortium) (September 2011). "An updated tree of Y-chromosome Haplogroup O and revised phylogenetic positions of mutations P164 and PK4". European Journal of Human Genetics. 19 (9): 1013–5. doi:10.1038/ejhg.2011.64. PMC 3179364. PMID 21505448.

[Park2012-15] Park MJ, Lee HY, Yang WI, Shin KJ (July 2012). "Understanding the Y chromosome variation in Korea--relevance of combined haplogroup and haplotype analyses". International Journal of Legal Medicine. 126 (4): 589–99. doi:10.1007/s00414-012-0703-9. PMID 22569803. S2CID 27644576.

[Katoh2005-16] Katoh T, Munkhbat B, Tounai K, Mano S, Ando H, Oyungerel G, et al. (February 2005). "Genetic features of Mongolian ethnic groups revealed by Y-chromosomal analysis". Gene. 346: 63–70. doi:10.1016/j.gene.2004.10.023. PMID 15716011.

[Kim2011-17] ^ ^a ^b ^c ^d ^e ^f ^g Kim SH, Kim KC, Shin DJ, Jin HJ, Kwak KD, Han MS, et al. (April 2011). "High frequencies of Y-chromosome haplogroup O2b-SRY465 lineages in Korea: a genetic perspective on the peopling of Korea". Investigative Genetics. 2 (1): 10. doi:10.1186/2041-2223-2-10. PMC 3087676. PMID 21463511.

[Wells2001-18] Wells RS, Yuldasheva N, Ruzibakiev R, Underhill PA, Evseeva I, Blue-Smith J, et al. (August 2001). "The Eurasian heartland: a continental perspective on Y-chromosome diversity". Proceedings of the National Academy of Sciences of the United States of America. 98 (18): 10244–9. Bibcode:2001PNAS...9810244W. doi:10.1073/pnas.171305098. PMC 56946. PMID 11526236.

[Hammer2006-19] ^ ^a ^b ^c ^d ^e ^f ^g ^h Hammer MF, Karafet TM, Park H, Omoto K, Harihara S, Stoneking M, et al. (2006). "Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes". Journal of Human Genetics. 51 (1): 47–58. doi:10.1007/s10038-005-0322-0. PMID 16328082.

[Kharkov2007-20] Khar'kov VN, Stepanov VA, Medvedeva OF, Spiridonova MG, Voevoda MI, Tadinova VN, et al. (May 2007). "[Gene pool differences between northern and southern Altaians inferred from the data on Y-chromosomal haplogroups]". Genetika (in Russian). 43 (5): 675–87. doi:10.1134/S1022795407050110. PMID 17633562. S2CID 566825.

[Dulik2012-21] Dulik MC, Zhadanov SI, Osipova LP, Askapuli A, Gau L, Gokcumen O, et al. (February 2012). "Mitochondrial DNA and Y chromosome variation provides evidence for a recent common ancestry between Native Americans and Indigenous Altaians". American Journal of Human Genetics. 90 (2): 229–46. doi:10.1016/j.ajhg.2011.12.014. PMC 3276666. PMID 22281367.

[Ashirbekov2017-22] Ashirbekov EE, Botbaev DM, Belkozhaev AM, Abayldaev AO, Neupokoeva AS, Mukhataev JE, et al. (2017). "Distribution of Y-Chromosome Haplogroups of the Kazakh from the South Kazakhstan, Zhambyl, and Almaty Regions". Reports of the National Academy of Sciences of the Republic of Kazakhstan. 6 (316): 85–95. ISSN 2224-5227.

[Yunusbayev2012-23] Yunusbayev B, Metspalu M, Järve M, Kutuev I, Rootsi S, Metspalu E, et al. (January 2012). "The Caucasus as an asymmetric semipermeable barrier to ancient human migrations". Molecular Biology and Evolution. 29 (1): 359–65. doi:10.1093/molbev/msr221. PMID 21917723.

[Malyarchuk2013-24] Malyarchuk B, Derenko M, Denisova G, Khoyt S, Woźniak M, Grzybowski T, et al. (December 2013). "Y-chromosome diversity in the Kalmyks at the ethnical and tribal levels". Journal of Human Genetics. 58 (12): 804–11. doi:10.1038/jhg.2013.108. PMID 24132124.

[FTDNA-25] "Y-DNA D Haplogroup Project". Family Tree DNA.

[DiCristofaro2013-26] Di Cristofaro J, Pennarun E, Mazières S, Myres NM, Lin AA, Temori SA, et al. (2013). "Afghan Hindu Kush: where Eurasian sub-continent gene flows converge". PLOS ONE. 8 (10): e76748. Bibcode:2013PLoSO...876748D. doi:10.1371/journal.pone.0076748. PMC 3799995. PMID 24204668.

[Su2000-27] Su B, Jin L, Underhill P, Martinson J, Saha N, McGarvey ST, et al. (July 2000). "Polynesian origins: insights from the Y chromosome". Proceedings of the National Academy of Sciences of the United States of America. 97 (15): 8225–8228. Bibcode:2000PNAS...97.8225S. doi:10.1073/pnas.97.15.8225. PMC 26928. PMID 10899994.

[Dong2002-28] Dong Y, Shi H, Li W, Yang J, Zeng W, Li K, et al. (September 2002). "怒江大峡谷及下游地区7个云南少数民族YAP位点的多态性研究----中国科学院古脊椎动物与古人类研究所" [Polymorphism of YAP locus in seven ethnic minorities in the Nujiang Grand Canyon and downstream areas of Yunnan.]. Acta Anthropologica Sinica. 21 (3): 250. Retrieved 2024-09-04.

[Underhill2000-29] Underhill PA, Shen P, Lin AA, Jin L, Passarino G, Yang WH, et al. (November 2000). "Y chromosome sequence variation and the history of human populations". Nature Genetics. 26 (3): 358–61. doi:10.1038/81685. PMID 11062480. S2CID 12893406.

[Xue2006-30] Xue Y, Zerjal T, Bao W, Zhu S, Shu Q, Xu J, et al. (April 2006). "Male demography in East Asia: a north-south contrast in human population expansion times". Genetics. 172 (4): 2431–9. doi:10.1534/genetics.105.054270. PMC 1456369. PMID 16489223.

[pmid25090432-31] Wang CC, Wang LX, Shrestha R, Zhang M, Huang XY, Hu K, et al. (2014). "Genetic structure of Qiangic populations residing in the western Sichuan corridor". PLOS ONE. 9 (8): e103772. Bibcode:2014PLoSO...9j3772W. doi:10.1371/journal.pone.0103772. PMC 4121179. PMID 25090432.

[WenBo2004-32] Wen B, Xie X, Gao S, Li H, Shi H, Song X, et al. (May 2004). "Analyses of genetic structure of Tibeto-Burman populations reveals sex-biased admixture in southern Tibeto-Burmans". American Journal of Human Genetics. 74 (5): 856–65. doi:10.1086/386292. PMC 1181980. PMID 15042512.

[Cai2011-33] Cai X, Qin Z, Wen B, Xu S, Wang Y, Lu Y, et al. (2011). "Human migration through bottlenecks from Southeast Asia into East Asia during Last Glacial Maximum revealed by Y chromosomes". PLOS ONE. 6 (8): e24282. Bibcode:2011PLoSO...624282C. doi:10.1371/journal.pone.0024282. PMC 3164178. PMID 21904623.

[34] Tajima A, Hayami M, Tokunaga K, Juji T, Matsuo M, Marzuki S, et al. (2004). "Genetic origins of the Ainu inferred from combined DNA analyses of maternal and paternal lineages". Journal of Human Genetics. 49 (4): 187–93. doi:10.1007/s10038-004-0131-x. PMID 14997363.

[Youichi2014-35] Sato Y, Shinka T, Ewis AA, Yamauchi A, Iwamoto T, Nakahori Y (2014). "Overview of genetic variation in the Y chromosome of modern Japanese males". Anthropological Science. 122 (3): 131–136. doi:10.1537/ase.140709.

[tumonggor-36] Tumonggor MK, Karafet TM, Downey S, Lansing JS, Norquest P, Sudoyo H, et al. (September 2014). "Isolation, contact and social behavior shaped genetic diversity in West Timor". Journal of Human Genetics. 59 (9): 494–503. doi:10.1038/jhg.2014.62. PMC 4521296. PMID 25078354.

[Sakitani-37] Sakiya M (2009). DNA・考古・言語の学際研究が示す新・日本列島史 [A New History of the Japanese Archipelago Revealed by Interdisciplinary Research on DNA, Archaeology, and Language] (in Japanese). Benseishuppan.

[pmid12546781-38] Thangaraj K, Singh L, Reddy AG, Rao VR, Sehgal SC, Underhill PA, et al. (January 2003). "Genetic affinities of the Andaman Islanders, a vanishing human population". Current Biology. 13 (2): 86–93. doi:10.1016/S0960-9822(02)01336-2. PMID 12546781. S2CID 12155496.

[39] "FamilyTreeDNA". Y-DNA D Haplogroup Project.

[Cordaux2004-40] Cordaux R, Weiss G, Saha N, Stoneking M (August 2004). "The northeast Indian passageway: a barrier or corridor for human migrations?". Molecular Biology and Evolution. 21 (8): 1525–33. doi:10.1093/molbev/msh151. PMID 15128876.

[Chandrasekar-41] Chandrasekar A, Saheb SY, Gangopadyaya P, Gangopadyaya S, Mukherjee A, Basu D, et al. (2007). "YAP insertion signature in South Asia". Annals of Human Biology. 34 (5): 582–6. doi:10.1080/03014460701556262. PMID 17786594. S2CID 11860142.

[Reddy2007-42] Reddy BM, Langstieh BT, Kumar V, Nagaraja T, Reddy AN, Meka A, et al. (November 2007). "Austro-Asiatic tribes of Northeast India provide hitherto missing genetic link between South and Southeast Asia". PLOS ONE. 2 (11): e1141. Bibcode:2007PLoSO...2.1141R. doi:10.1371/journal.pone.0001141. PMC 2065843. PMID 17989774.

[43] 23andme raw data

[Jobling_2000-44] Jobling MA, Tyler-Smith C (August 2000). "New uses for new haplotypes the human Y chromosome, disease and selection". Trends in Genetics. 16 (8): 356–362. doi:10.1016/S0168-9525(00)02057-6. PMID 10904265.

[Kalaydjieva_2001-45] Kalaydjieva L, Calafell F, Jobling MA, Angelicheva D, de Knijff P, Rosser ZH, et al. (February 2001). "Patterns of inter- and intra-group genetic diversity in the Vlax Roma as revealed by Y chromosome and mitochondrial DNA lineages". European Journal of Human Genetics. 9 (2): 97–104. doi:10.1038/sj.ejhg.5200597. PMID 11313742.

[Underhill_2000-46] Underhill PA, Shen P, Lin AA, Jin L, Passarino G, Yang WH, et al. (November 2000). "Y chromosome sequence variation and the history of human populations". Nature Genetics. 26 (3): 358–361. doi:10.1038/81685. PMID 11062480.

[Hammer_2001-47] Hammer MF, Karafet TM, Redd AJ, Jarjanazi H, Santachiara-Benerecetti S, Soodyall H, et al. (July 2001). "Hierarchical patterns of global human Y-chromosome diversity". Molecular Biology and Evolution. 18 (7): 1189–1203. doi:10.1093/oxfordjournals.molbev.a003906. PMID 11420360.

[Karafet_2001-48] Karafet T, Xu L, Du R, Wang W, Feng S, Wells RS, et al. (September 2001). "Paternal population history of East Asia: sources, patterns, and microevolutionary processes". American Journal of Human Genetics. 69 (3): 615–628. doi:10.1086/323299. PMC 1235490. PMID 11481588.

[Semino_2000-49] Semino O, Passarino G, Oefner PJ, Lin AA, Arbuzova S, Beckman LE, et al. (November 2000). "The genetic legacy of Paleolithic Homo sapiens sapiens in extant Europeans: a Y chromosome perspective". Science. 290 (5494): 1155–1159. Bibcode:2000Sci...290.1155S. doi:10.1126/science.290.5494.1155. PMID 11073453.

[Su_1999-50] Su B, Xiao J, Underhill P, Deka R, Zhang W, Akey J, et al. (December 1999). "Y-Chromosome evidence for a northward migration of modern humans into Eastern Asia during the last Ice Age". American Journal of Human Genetics. 65 (6): 1718–1724. doi:10.1086/302680. PMC 1288383. PMID 10577926.

[Capelli_2001-51] Capelli C, Wilson JF, Richards M, Stumpf MP, Gratrix F, Oppenheimer S, et al. (February 2001). "A predominantly indigenous paternal heritage for the Austronesian-speaking peoples of insular Southeast Asia and Oceania". American Journal of Human Genetics. 68 (2): 432–443. doi:10.1086/318205. PMC 1235276. PMID 11170891.

[52] Y-DNA Haplogroup D and its Subclades - 2019

[ISOGG2014-53] Y-DNA Haplogroup D and its Subclades - 2014

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[2]

[3]

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[8]

[9]

[10]

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[20]

[21]

[22]

[23]

[24]

[25]

[26]

[27]

[28]

[29]

[30]

[31]

[32]

[33]

[34]

[35]

[36]

[37]

[38]

[39]

[40]

[41]

[42]

[43]

[44]

[45]

[46]

[47]

[48]

[49]

[50]

[51]

[52]

[53]

[χ 1]

[χ 2]

[χ 3]

[χ 4]

[χ 5]

[χ 6]

[χ 7]

[χ 8]

[χ 9]

[χ 10]

[χ 11]

[χ 12]

[χ 13]