Termite-leu RNA motif: Difference between revisions
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{{Short description|RNA structure discovered by bioinformatics}} |
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[[File:Termite-leu-RNA.svg|right|frame|Consensus secondary structure of Termite-''leu'' RNAs. This figure is adapted from a previous publication.<ref name="Weinberg2010"/>]] |
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{{primary sources|date=November 2021}} |
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| ⚫ | The '''Termite-''leu'' RNA motif''' is a conserved [[RNA]] structure discovered by [[bioinformatics]].<ref name="Weinberg2010">{{cite journal | |
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{{Infobox rfam |
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| Name = Termite-leu RNA |
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| image = Termite-leu-RNA.svg |
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| width = |
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| caption = Consensus secondary structure of Termite-''leu'' RNAs |
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| Symbol = Termite-leu RNA |
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| AltSymbols = |
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| Rfam = RF01730 |
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| miRBase = |
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| miRBase_family = |
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| RNA_type = ''Cis''-regulatory element |
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| Tax_domain = Termite gut metagenome |
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| GO = |
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| SO = |
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| CAS_number = |
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| EntrezGene = |
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| HGNCid = |
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| OMIM = |
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| PDB = |
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| RefSeq = |
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| Chromosome = |
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| Arm = |
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| Band = |
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| LocusSupplementaryData = |
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}} |
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| ⚫ | The '''Termite-''leu'' RNA motif''' is a conserved [[RNA]] structure discovered by [[bioinformatics]].<ref name="Weinberg2010">{{cite journal |vauthors=Weinberg Z, Wang JX, Bogue J, etal |title=Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea and their metagenomes |journal=Genome Biol |volume=11 |issue=3 |pages=R31 |date=March 2010 |pmid=20230605 |doi=10.1186/gb-2010-11-3-r31 |pmc=2864571 |doi-access=free }}</ref> It is found only in [[DNA]] sequences extracted from uncultivated [[bacteria]] living in [[termite]] [[hindgut]]s, and has not yet been detected in any known cultivated organism. In many cases, Termite-''leu'' RNAs are found in the likely [[5′ untranslated region]]s of multive genes related to the synthesis of the [[amino acid]] [[leucine]]. However, in several cases it is not found in this type of location. Therefore, it was considered ambiguous as to whether Termite-''leu'' RNAs constitute [[cis-regulatory element]]s. |
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==References== |
==References== |
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{{reflist}} |
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<references/> |
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==External links== |
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* {{Rfam|id=RF01730|name=Termite-leu RNA}} |
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[[Category:Cis-regulatory RNA elements]] |
[[Category:Cis-regulatory RNA elements]] |
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Latest revision as of 21:46, 6 October 2024
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| Termite-leu RNA | |
|---|---|
 Consensus secondary structure of Termite-leu RNAs | |
| Identifiers | |
| Symbol | Termite-leu RNA |
| Rfam | RF01730 |
| Other data | |
| RNA type | Cis-regulatory element |
| Domain(s) | Termite gut metagenome |
| PDB structures | PDBe |
The Termite-leu RNA motif is a conserved RNA structure discovered by bioinformatics.[1] It is found only in DNA sequences extracted from uncultivated bacteria living in termite hindguts, and has not yet been detected in any known cultivated organism. In many cases, Termite-leu RNAs are found in the likely 5′ untranslated regions of multive genes related to the synthesis of the amino acid leucine. However, in several cases it is not found in this type of location. Therefore, it was considered ambiguous as to whether Termite-leu RNAs constitute cis-regulatory elements.
References
[edit]- ^ Weinberg Z, Wang JX, Bogue J, et al. (March 2010). "Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea and their metagenomes". Genome Biol. 11 (3): R31. doi:10.1186/gb-2010-11-3-r31. PMC 2864571. PMID 20230605.
External links
[edit]
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