Burkholderiales-2 RNA motif: Difference between revisions
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The '''Burkholderiales-2 RNA motif''' is a conserved [[RNA]] structure that was [[Bioinformatics discovery of non-coding RNAs|discovered by bioinformatics]].<ref name="Weinberg2017b">{{cite journal |vauthors=Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR, Sherlock ME, Breaker RR |title=Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions |journal=Nucleic Acids Res. |volume=45 |issue=18 |pages=10811–10823 |date=October 2017 |pmid=28977401 |pmc=5737381 |doi=10.1093/nar/gkx699 }}</ref> |
The '''Burkholderiales-2 RNA motif''' is a conserved [[RNA]] structure that was [[Bioinformatics discovery of non-coding RNAs|discovered by bioinformatics]].<ref name="Weinberg2017b">{{cite journal |vauthors=Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR, Sherlock ME, Breaker RR |title=Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions |journal=Nucleic Acids Res. |volume=45 |issue=18 |pages=10811–10823 |date=October 2017 |pmid=28977401 |pmc=5737381 |doi=10.1093/nar/gkx699 }}</ref> |
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Burkholderiales-2 motifs are found in [[Betaproteobacteria]]. Although one example is predicted in the |
Burkholderiales-2 motifs are found in [[Betaproteobacteria]]. Although one example is predicted in the phylum [[Bacteroidota]], this is likely to be the result of a recent [[horizontal gene transfer]] or sequence contamination. |
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Burkholderiales-2 RNAs likely function in ''trans'' as [[Small RNA|sRNA]]s. There is weak evidence of an association with S24 [[peptidase]]s. |
Burkholderiales-2 RNAs likely function in ''trans'' as [[Small RNA|sRNA]]s. There is weak evidence of an association with S24 [[peptidase]]s. |
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Latest revision as of 08:38, 11 October 2024
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| Burkholderiales-2 | |
|---|---|
 Consensus secondary structure and sequence conservation of Burkholderiales-2 RNA | |
| Identifiers | |
| Symbol | Burkholderiales-2 |
| Rfam | RF02917 |
| Other data | |
| RNA type | Cis-reg |
| SO | SO:0005836 |
| PDB structures | PDBe |
The Burkholderiales-2 RNA motif is a conserved RNA structure that was discovered by bioinformatics.[1] Burkholderiales-2 motifs are found in Betaproteobacteria. Although one example is predicted in the phylum Bacteroidota, this is likely to be the result of a recent horizontal gene transfer or sequence contamination.
Burkholderiales-2 RNAs likely function in trans as sRNAs. There is weak evidence of an association with S24 peptidases.
References
[edit]- ^ Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR, Sherlock ME, Breaker RR (October 2017). "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids Res. 45 (18): 10811–10823. doi:10.1093/nar/gkx699. PMC 5737381. PMID 28977401.
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