Jump to content

Ocean Biodiversity Information System: Difference between revisions

From Wikipedia, the free encyclopedia
Browse history interactively
← Previous edit
Content deleted Content added
VisualWikitext
No edit summary
Object identification system
 
(24 intermediate revisions by 15 users not shown)
Line 1: Line 1:
{{Redirect|OBIS|Object identification system|IEC 62056}}
{{Short description|Online marine biology database}}{{External links|date=December 2023}}
{{Infobox website
{{Infobox website
| name = Ocean Biodiversity Information System
| name = Ocean Biodiversity Information System
Line 4: Line 6:
| screenshot_size =
| screenshot_size =
| caption =
| caption =
| url = [http://www.obis.org www.obis.org]
| url = [http://www.obis.org/ www.obis.org]
| alexa =
| alexa =
| commercial = no
| commercial = no
Line 11: Line 13:
| registration = not required
| registration = not required
| owner =
| owner =
| launch_date = March 2002
| launch_date = May 2000
| current_status = active
| current_status = active
| author =
| author =
}}
}}
[[File:OBIS records for ocean sunfish, Mola mola, as at July 2018, visualised by the OBIS mapper (www.iobis.org).jpg|thumb|OBIS records for [[ocean sunfish]], ''Mola mola'', as at July 2018, visualised by the OBIS mapper (www.obis.org)]]
[[File:OBIS records for ocean sunfish, Mola mola, as at July 2018, visualised by the OBIS mapper (www.iobis.org).jpg|thumb|OBIS records for [[ocean sunfish]], ''Mola mola'', as at July 2018, visualised by the OBIS mapper (www.obis.org)]]
The '''Ocean Biodiversity Information System''' ('''OBIS''') is a web-based access point to information about the distribution and abundance of living [[species]] in the [[ocean]]. It was developed as the information management component of the ten year [[Census of Marine Life]] (CoML) (2001-2010), but is not limited to CoML-derived data, and aims to provide an integrated view of all marine biodiversity data that may be made available to it on an open access basis by respective data custodians. According to its web site as at July 2018, OBIS "is a global open-access data and information clearing-house on marine biodiversity for science, conservation and sustainable development." 8 specific objectives are listed in the OBIS site, of which the leading item is to "Provide [the] world's largest scientific knowledge base on the diversity, distribution and abundance of all marine organisms in an integrated and standardized format".<ref name-"obis">[http://www.obis.org/ OBIS website (visited 18 July 2018)]</ref>
The '''Ocean Biodiversity Information System''' ('''OBIS'''), formerly '''Ocean Biogeographic Information System''', is a web-based access point to information about the distribution and abundance of living [[species]] in the [[ocean]]. It was developed as the information management component of the ten year [[Census of Marine Life]] (CoML) (2001-2010), but is not limited to CoML-derived data, and aims to provide an integrated view of all marine biodiversity data that may be made available to it on an open access basis by respective data custodians. According to its web site as at July 2018, OBIS "is a global open-access data and information clearing-house on marine biodiversity for science, conservation and sustainable development." 8 specific objectives are listed in the OBIS site, of which the leading item is to "Provide [the] world's largest scientific knowledge base on the diversity, distribution and abundance of all marine organisms in an integrated and standardized format".<ref name="obis">[http://www.obis.org/ OBIS website (visited 18 July 2018)]</ref>


==History and current status==
==History and current status==
Initial ideas for OBIS were developed at a CoML meeting on benthic (bottom-dwelling) ocean life in October 1997. Recommendations from this workshop led to a web site (http://marine.rutgers.edu/OBIS) at Rutgers in 1998 to demonstrate the initial OBIS concept.<ref>[https://tos.org/oceanography/assets/docs/12-3_grassle.pdf Grassle, J.F. and Stocks, K.I., 1999. "A Global Ocean Biogeographic Information System (OBIS) for the Census of Marine Life." ''Oceanography'' 12(3): 12-14.]</ref> An inaugural OBIS International Workshop was held on November 3–4 1999 in Washington, DC, which led to scoping of the project and outreach to potential partners, with selected contributions published in a special issue of ''Oceanography'' magazine,<ref>''Oceanography'' Volume 13, no. 3, November 2000. Special Issue: Ocean Biogeographic Information System.</ref> within which OBIS founder Dr. [[J. Frederick Grassle|J. F. Grassle]] articulated the vision of OBIS as "an on-line, worldwide atlas for accessing, modeling and mapping marine biological data in a multidimensional geographic context."<ref>[https://tos.org/oceanography/assets/docs/13-3_grassle.pdf Grassle, J.F. 2000. "The Ocean Biogeographic Information System (OBIS): an on-line, worldwide atlas for accessing, modeling and mapping marine biological data in a multidimensional geographic context." ''Oceanography'' 13(3): 5-7.]</ref> In May 2000, US Government Agencies in the National Oceanographic Partnership Program together with the [[Alfred P. Sloan Foundation]] funded eight research projects to initiate OBIS. In May 2001, the US [[National Science Foundation]] funded [[Rutgers University]] to develop a global portal for OBIS. Also in 2001, an OBIS International Committee was formed and its first meeting was held in August 2001.<ref>[http://archimer.ifremer.fr/doc/00322/43301/43037.pdf Zhang, Y. and Grassle, J.F. 2003. "A portal for the Ocean Biogeographic Information System." ''Oceanologica Acta'' 25(5): 193-197.]</ref>
Initial ideas for OBIS were developed at a CoML meeting on benthic (bottom-dwelling) ocean life in October 1997. Recommendations from this workshop led to a web site (http://marine.rutgers.edu/OBIS) at Rutgers in 1998 to demonstrate the initial OBIS concept.<ref>[https://tos.org/oceanography/assets/docs/12-3_grassle.pdf Grassle, J.F. and Stocks, K.I., 1999. "A Global Ocean Biogeographic Information System (OBIS) for the Census of Marine Life." ''Oceanography'' 12(3): 12-14.]</ref> An inaugural OBIS International Workshop was held on November 3–4, 1999 in Washington, DC, which led to scoping of the project and outreach to potential partners, with selected contributions published in a special issue of ''Oceanography'' magazine,<ref>''Oceanography'' Volume 13, no. 3, November 2000. Special Issue: Ocean Biogeographic Information System.</ref> within which OBIS founder Dr. [[J. Frederick Grassle|J. F. Grassle]] articulated the vision of OBIS as "an on-line, worldwide atlas for accessing, modeling and mapping marine biological data in a multidimensional geographic context."<ref>[https://tos.org/oceanography/assets/docs/13-3_grassle.pdf Grassle, J.F. 2000. "The Ocean Biogeographic Information System (OBIS): an on-line, worldwide atlas for accessing, modeling and mapping marine biological data in a multidimensional geographic context." ''Oceanography'' 13(3): 5-7.]</ref> In May 2000, US Government Agencies in the National Oceanographic Partnership Program together with the [[Alfred P. Sloan Foundation]] funded eight research projects to initiate OBIS. In May 2001, the US [[National Science Foundation]] funded [[Rutgers University]] to develop a global portal for OBIS. Also in 2001, an OBIS International Committee was formed and its first meeting was held in August 2001.<ref>[http://archimer.ifremer.fr/doc/00322/43301/43037.pdf Zhang, Y. and Grassle, J.F. 2003. "A portal for the Ocean Biogeographic Information System." ''Oceanologica Acta'' 25(5): 193-197.]</ref>


The production version of the OBIS Portal was launched at Rutgers University in 2002 as the web site http://www.iobis.org, serving 430,000 species-based georeferenced data records from 8 partner databases including fish records from [[FishBase]], cephalopods from [[CephBase]], corals from [[Biogeoinformatics of Hexacorals]], mollusks from the [[Indo-Pacific Mollusc Database]] and more.<ref>{{Cite web |url=http://www.iobis.org/ |title=www.iobis.org: archived version, 20 March 2002 |access-date=20 March 2002 |archive-url=https://web.archive.org/web/20020320133251/http://www.iobis.org/ |archive-date=20 March 2002 |url-status=live }}</ref> By May 2006, the OBIS Portal was able to access 9.5 million records of 59,000 species from 112 databases, <ref>{{Cite web |url=http://www.iobis.org/OBISPortal |title=www.iobis.org: archived version, 2 May 2006 |access-date=2 May 2006 |archive-url=https://web.archive.org/web/20060502051119/http://www.iobis.org/OBISPortal |archive-date=2 May 2006 |url-status=live }}</ref> and by December 2010 (at the conclusion of the Census of Marine Life) provided access to 27.7 million records representing 167,000 taxon names.<ref name="OBIS2010">[https://web.archive.org/web/20101213223407/http://www.obis.org/ www.obis.org: archived version, 13 December 2010]</ref> As at July 2018, the OBIS website states that the system provides access to over 45 million observations of nearly 120,000 marine species (the reduced number of names cited being as a result of synonym resolution, i.e. reduction of taxa recorded under multiple names to a single accepted name), based on contributions from 500 institutions from 56 countries.<ref>[https://web.archive.org/web/20180705054455/http://iobis.org/about/ About OBIS: archived version, 5 July 2018]</ref>
The production version of the OBIS Portal was launched at Rutgers University in 2002 as the web site http://www.iobis.org, serving 430,000 species-based georeferenced data records from 8 partner databases including fish records from [[FishBase]], cephalopods from [[CephBase]], corals from [[Biogeoinformatics of Hexacorals]], mollusks from the [[Indo-Pacific Mollusc Database]] and more.<ref>{{Cite web |url=http://www.iobis.org/ |title=www.iobis.org: archived version, 20 March 2002 |access-date=20 March 2002 |archive-url=https://web.archive.org/web/20020320133251/http://www.iobis.org/ |archive-date=20 March 2002 |url-status=live }}</ref> By May 2006, the OBIS Portal was able to access 9.5 million records of 59,000 species from 112 databases,<ref>{{Cite web |url=http://www.iobis.org/OBISPortal |title=www.iobis.org: archived version, 2 May 2006 |access-date=2 May 2006 |archive-url=https://web.archive.org/web/20060502051119/http://www.iobis.org/OBISPortal |archive-date=2 May 2006 |url-status=live }}</ref> and by December 2010 (at the conclusion of the Census of Marine Life) provided access to 27.7 million records representing 167,000 taxon names.<ref name="OBIS2010">[https://web.archive.org/web/20101213223407/http://www.obis.org/ www.obis.org: archived version, 13 December 2010]</ref> As at July 2018, the OBIS website states that the system provides access to over 45 million observations of nearly 120,000 marine species (the reduced number of names cited being as a result of synonym resolution, i.e. reduction of taxa recorded under multiple names to a single accepted name), based on contributions from 500 institutions from 56 countries.<ref>[https://web.archive.org/web/20180705054455/http://iobis.org/about/ About OBIS: archived version, 5 July 2018]</ref>


In 2009 OBIS was adopted as a project by International Oceanographic Data and Information Exchange (IODE) programme of the [[Intergovernmental Oceanographic Commission]] (IOC) of [[UNESCO]] and in 2011, with the cessation of funding for the Rutgers-based secretariat and portal from the Sloan Foundation, an offer of hosting by the [[Flanders Marine Institute]] (VLIZ) in [[Oostende]], [[Belgium]] was accepted to become the long term host for the system and also the OBIS secretariat moved from Rutgers University to the IOC Project Office for IODE in Oostende from where OBIS is presently maintained and additional development is carried out, without change of web address. OBIS is thus now located in Oostende, in the same building which is also home to VLIZ. VLIZ maintains two taxonomic databases, the [[World Register of Marine Species]] and [http://www.irmng.org/ IRMNG], the [[Interim Register of Marine and Nonmarine Genera]], both of which feed into taxonomic decisions used to control the display of species-based information in OBIS and also provide the taxonomic hierarchy via which OBIS content can be navigated. OBIS is currently under the direction of IODE with advice from a steering group, the IODE Steering Group for OBIS (SG-OBIS); operational activities are directed by an OBIS Executive Committee (OBIS-EC) with support from 6 OBIS Task Teams. The OBIS secretariat, hosted at the UNESCO/IOC project office for IODE in Oostende (Belgium), includes the OBIS project manager and data manager and in addition to maintaining the OBIS system also provides training and technical assistance to its data providers, guides new data standards and technical developments, and encourages international cooperation to foster the group benefits of the network.<ref>[http://www.iobis.org/about/governance/ About OBIS: Governance]</ref>
In 2009 OBIS was adopted as a project by International Oceanographic Data and Information Exchange (IODE) programme of the [[Intergovernmental Oceanographic Commission]] (IOC) of [[UNESCO]] and in 2011, with the cessation of funding for the Rutgers-based secretariat and portal from the Sloan Foundation, an offer of hosting by the [[Flanders Marine Institute]] (VLIZ) in [[Ostend]], [[Belgium]] was accepted to become the long term host for the system and also the OBIS secretariat moved from Rutgers University to the IOC Project Office for IODE in Ostend from where OBIS is presently maintained and additional development is carried out. The web address changed to [https://www.obis.org]. OBIS is thus now located in Ostend, in the same building which is also home to VLIZ. VLIZ maintains two taxonomic databases, the [[World Register of Marine Species]] and [http://www.irmng.org/ IRMNG], the [[Interim Register of Marine and Nonmarine Genera]], both of which feed into taxonomic decisions used to control the display of species-based information in OBIS and also provide the taxonomic hierarchy via which OBIS content can be navigated. OBIS is currently under the direction of IODE with advice from a steering group, the IODE Steering Group for OBIS (SG-OBIS); operational activities are directed by an OBIS Executive Committee (OBIS-EC) with support from various OBIS Task Teams and ad-hoc OBIS project teams. The OBIS secretariat, hosted at the UNESCO/IOC project office for IODE in Ostend (Belgium), includes the OBIS project manager and data manager and in addition to maintaining the OBIS system also provides training and technical assistance to its data providers, guides new data standards and technical developments, and encourages international cooperation to foster the group benefits of the network.<ref>[http://www.iobis.org/about/governance/ About OBIS: Governance]</ref>


Data available via OBIS cover all groups of organisms that have any association with marine or [[estuarine]] habitats, also including shorelines and the atmosphere above the ocean, such as marine [[vertebrates]] (fishes, marine mammals, turtles, seabirds, etc.); marine [[invertebrates]] (including [[zooplankton]]); marine [[bacteria]]; and marine [[plants]] (e.g. phytoplankton, seaweeds, mangroves).
Data available via OBIS cover all groups of organisms that have any association with marine or [[estuarine]] habitats, also including shorelines and the atmosphere above the ocean, such as marine [[vertebrates]] (fishes, marine mammals, turtles, seabirds, etc.); marine [[invertebrates]] (including [[zooplankton]]); marine [[bacteria]]; and marine [[plants]] (e.g. phytoplankton, seaweeds, mangroves).


==OBIS portal==
==OBIS portal==
As available web technologies have developed, the [http://www.iobis.org OBIS Portal] has been through a number of iterations since its inception in 2002. Initially the system retrieved remote data in real time in response to a user query and used the [https://web.archive.org/web/20070311015926/http://hercules.kgs.ku.edu/website/Specimen_Mapper/mxmapit.cfm KGS&nbsp;Mapper] to visualize the results. In 2004, centralized metadata indexing and cacheing was introduced leading to faster and more reliable results, and the [http://www.marine.csiro.au/csquares/about-mapper.htm c-squares&nbsp;mapper] was added to options for data visualization.<ref>[https://www.oceandocs.org/bitstream/handle/1834/5643/202.pdf?sequence=1#page=167 Tony Rees and Phoebe Zhang, 2007. "Evolving concepts in the architecture and functionality of OBIS, the Ocean Biogeographic Information System". in Vanden Berghe, E. et al. (ed.) ''Proceedings of Ocean Biodiversity Informatics: an international conference on marine biodiversity data management Hamburg, Germany, 29 November-1 December, 2004.'' IOC Workshop Report, 202, VLIZ Special Publication 37: pp. 167-176.]</ref> In 2010, a full [[Geographic information system|web GIS]] based system was introduced for the first time along with a new version of the web site which resulted in considerably more detailed and flexible presentation of search results along with a number of new search options.<ref>[https://pdfs.semanticscholar.org/c7fa/69ef3658c0f4a9998f438e709372664502e3.pdf Ei Fujioka ''et al.'', 2012. "Advancing global marine biogeography research with open-source GIS software and cloud computing." ''Transactions in GIS'' 16(2): 143–160.]</ref> In April 2018, funding was announced to develop a new "2.0" version of OBIS with improved capabilities.<ref>[http://www.iobis.org/2018/04/17/obis2/ "IOC invests in OBIS2.0, a major re-engineering of the OBIS platform"],</ref>, and is released on 29 January 2019.<ref>[https://obis.org/2019/01/29/obis2/ "OBIS 2.0 released"],</ref>. The website URL changed from iobis.org to obis.org.
As available web technologies have developed, the [http://www.obis.org OBIS Portal] has been through a number of iterations since its inception in 2002. Initially the system retrieved remote data in real time in response to a user query and used the [https://web.archive.org/web/20070311015926/http://hercules.kgs.ku.edu/website/Specimen_Mapper/mxmapit.cfm KGS&nbsp;Mapper] to visualize the results. In 2004, centralized metadata indexing and cacheing was introduced leading to faster and more reliable results, and the [http://www.marine.csiro.au/csquares/about-mapper.htm c-squares&nbsp;mapper] was added to options for data visualization.<ref>[https://www.oceandocs.org/bitstream/handle/1834/5643/202.pdf?sequence=1#page=167 Tony Rees and Phoebe Zhang, 2007. "Evolving concepts in the architecture and functionality of OBIS, the Ocean Biogeographic Information System". in Vanden Berghe, E. et al. (ed.) ''Proceedings of Ocean Biodiversity Informatics: an international conference on marine biodiversity data management Hamburg, Germany, 29 November-1 December, 2004.'' IOC Workshop Report, 202, VLIZ Special Publication 37: pp. 167-176.]</ref> In 2010, a full [[Geographic information system|web GIS]] based system was introduced for the first time along with a new version of the web site which resulted in considerably more detailed and flexible presentation of search results along with a number of new search options.<ref>[https://web.archive.org/web/20180718083900/https://pdfs.semanticscholar.org/c7fa/69ef3658c0f4a9998f438e709372664502e3.pdf Ei Fujioka ''et al.'', 2012. "Advancing global marine biogeography research with open-source GIS software and cloud computing." ''Transactions in GIS'' 16(2): 143–160.]</ref> In April 2018, funding was announced to develop a new "2.0" version of OBIS with improved capabilities.,<ref>[http://www.obis.org/2018/04/17/obis2/ "IOC invests in OBIS2.0, a major re-engineering of the OBIS platform"],</ref> and is released on 29 January 2019.<ref>[https://obis.org/2019/01/29/obis2/ "OBIS 2.0 released"],</ref> The website URL changed from iobis.org to obis.org.


==Regional OBIS nodes==
==Regional OBIS nodes==
Over the period 2004–present, an international network of [[Regional OBIS Nodes]] has also been established, that are facilitating the connection of data sources in their region to the master OBIS data network and also increasingly provide specialised services or views of OBIS data to users in their particular region.
Over the period 2004–present, an international network of [[Regional OBIS Nodes]] has also been established, that are facilitating the connection of data sources in their region to the master OBIS data network and also increasingly provide specialised services or views of OBIS data to users in their particular region.
*[http://www.iobis.org/obisrons/scar-marbin Antarctic OBIS]
*[http://www.iobis.org/obisrons/scar-marbin Antarctic OBIS]
:Hosted by Belgian Biodiversity Platform, Brussels and by [[Flanders Marine Institute]], Oostende. Managed by Bruno Danis
:Hosted by Belgian Biodiversity Platform, Brussels and by [[Flanders Marine Institute]], Ostend. Managed by Bruno Danis
*[http://www.iobis.org/obisrons/arobis Argentina]
*[http://www.iobis.org/obisrons/arobis Argentina]
:Hosted by Centro Nacional Patagonico - (CENPAT) - CONICET. Managed by Mirtha Lewis
:Hosted by Centro Nacional Patagonico - (CENPAT) - CONICET. Managed by Mirtha Lewis
Line 52: Line 54:
*[http://www.iobis.org/obisrons/subsaharanafrica Sub-Saharan Africa]
*[http://www.iobis.org/obisrons/subsaharanafrica Sub-Saharan Africa]
:Hosted by Southern African Data Centre for Oceanography. Managed by Marten Grundlingh
:Hosted by Southern African Data Centre for Oceanography. Managed by Marten Grundlingh
*[https://asean.chm-cbd.net/ Philippines]
⚫
:Hosted by ASEAN Centre for Biodiversity. Managed by Christian Elloran
*[http://www.iobis.org/obisrons/espobis Tropical and Subtropical Eastern South Pacific]
*[http://www.iobis.org/obisrons/espobis Tropical and Subtropical Eastern South Pacific]
:Hosted by University of Concepcion. Managed by Ruben Escribando
:Hosted by University of Concepcion. Managed by Ruben Escribando
Line 57: Line 61:
:Hosted by University of Sao Paulo (USP) and Reference Center on Environmental Information (CRIA. Managed by Fabio Lang Da Silvera
:Hosted by University of Sao Paulo (USP) and Reference Center on Environmental Information (CRIA. Managed by Fabio Lang Da Silvera
*[http://www.usgs.gov/obis-usa/ United States of America]
*[http://www.usgs.gov/obis-usa/ United States of America]
:Hosted by United States Geological Survey (USGS). Managed by Mark Fornwall
:Hosted by United States Geological Survey (USGS). Managed by Abby Benson.
*[http://aseanbiodiversity.org Philippines]
⚫
:Hosted by ASEAN Centre for Biodiversity. Managed by Christian Elloran


==See also==
==See also==
{{portal|Marine life|Oceans}}
*[[Census of Marine Life]]
*[[Census of Marine Life]]
* [[World Register of Marine Species]] (WoRMS)
* [[World Register of Marine Species]] (WoRMS)
Line 85: Line 88:


===Regional OBIS nodes===
===Regional OBIS nodes===
*[https://web.archive.org/web/20070318112033/http://afrobis.csir.co.za:8000/ AfrOBIS: Sub-Saharan Africa node of OBIS]
*[https://obis.org/node/14fc439c-707d-41d6-a3d4-b9d2696205fe/ AfrOBIS: Sub-Saharan Africa node of OBIS]
*[http://www.marbef.org/data/eurobis.php EurOBIS: European node of OBIS]
*[http://www.marbef.org/data/eurobis.php EurOBIS: European node of OBIS]
*[http://www.indobis.org/ IndOBIS: Indian Ocean node of OBIS]
*[http://www.indobis.org/ IndOBIS: Indian Ocean node of OBIS]
Line 92: Line 95:
*[http://nzobis.niwa.co.nz/ OBIS Southwestern Pacific: Southwestern Pacific regional node of OBIS]
*[http://nzobis.niwa.co.nz/ OBIS Southwestern Pacific: Southwestern Pacific regional node of OBIS]
*[http://www.scarmarbin.be/ SCAR-MarBIN: Antarctic Marine Biodiversity Information Network]
*[http://www.scarmarbin.be/ SCAR-MarBIN: Antarctic Marine Biodiversity Information Network]
⚫
*[https://asean.chm-cbd.net/ SEAOBIS: Southeast Asia node of OBIS ]
*[http://www.usgs.gov/obis-usa/ US OBIS: U.S.A. regional node of OBIS]
*[http://www.usgs.gov/obis-usa/ US OBIS: U.S.A. regional node of OBIS]
*[https://web.archive.org/web/20070810144040/http://marinebiodiversity.ca/OBISCanada OBIS Canada: Canadian regional node of OBIS]
*[https://web.archive.org/web/20070810144040/http://marinebiodiversity.ca/OBISCanada OBIS Canada: Canadian regional node of OBIS]
⚫
*[http://aseanbiodiversity.org SEAOBIS: Southeast Asia node of OBIS ]


===Thematic nodes===
===Thematic nodes===
*[http://seamap.env.duke.edu/ OBIS-SEAMAP (Ocean Biogeographic Information System - Spatial Ecological Analysis of Megavertebrate Populations)]
*[http://seamap.env.duke.edu/ OBIS-SEAMAP (Ocean Biodiversity Information System - Spatial Ecological Analysis of Megavertebrate Populations)]


===Parent project===
===Parent project===
Line 105: Line 108:
*[http://marine.rutgers.edu/OBIS/ Original OBIS Portal Prototype (circa 2000)]
*[http://marine.rutgers.edu/OBIS/ Original OBIS Portal Prototype (circa 2000)]
*[https://web.archive.org/web/*/http://www.iobis.org/ From the archives: Evolution of the OBIS Portal, 2002-current]
*[https://web.archive.org/web/*/http://www.iobis.org/ From the archives: Evolution of the OBIS Portal, 2002-current]



[[Category:Marine biology]]
[[Category:Marine biology]]
[[Category:Fisheries databases]]
[[Category:Fisheries databases]]
[[Category:Biodiversity]]
[[Category:Biogeography]]
[[Category:Biogeography]]
[[Category:Ecological data]]
[[Category:Ecological data]]

Latest revision as of 07:59, 17 November 2024

"OBIS" redirects here. For Object identification system, see IEC 62056.
Ocean Biodiversity Information System
Type of site
web-based data and information system
Available inEnglish
URLwww.obis.org
Commercialno
Registrationnot required
LaunchedMay 2000
Current statusactive
OBIS records for ocean sunfish, Mola mola, as at July 2018, visualised by the OBIS mapper (www.obis.org)

The Ocean Biodiversity Information System (OBIS), formerly Ocean Biogeographic Information System, is a web-based access point to information about the distribution and abundance of living species in the ocean. It was developed as the information management component of the ten year Census of Marine Life (CoML) (2001-2010), but is not limited to CoML-derived data, and aims to provide an integrated view of all marine biodiversity data that may be made available to it on an open access basis by respective data custodians. According to its web site as at July 2018, OBIS "is a global open-access data and information clearing-house on marine biodiversity for science, conservation and sustainable development." 8 specific objectives are listed in the OBIS site, of which the leading item is to "Provide [the] world's largest scientific knowledge base on the diversity, distribution and abundance of all marine organisms in an integrated and standardized format".[1]

History and current status

[edit]

Initial ideas for OBIS were developed at a CoML meeting on benthic (bottom-dwelling) ocean life in October 1997. Recommendations from this workshop led to a web site (http://marine.rutgers.edu/OBIS) at Rutgers in 1998 to demonstrate the initial OBIS concept.[2] An inaugural OBIS International Workshop was held on November 3–4, 1999 in Washington, DC, which led to scoping of the project and outreach to potential partners, with selected contributions published in a special issue of Oceanography magazine,[3] within which OBIS founder Dr. J. F. Grassle articulated the vision of OBIS as "an on-line, worldwide atlas for accessing, modeling and mapping marine biological data in a multidimensional geographic context."[4] In May 2000, US Government Agencies in the National Oceanographic Partnership Program together with the Alfred P. Sloan Foundation funded eight research projects to initiate OBIS. In May 2001, the US National Science Foundation funded Rutgers University to develop a global portal for OBIS. Also in 2001, an OBIS International Committee was formed and its first meeting was held in August 2001.[5]

The production version of the OBIS Portal was launched at Rutgers University in 2002 as the web site http://www.iobis.org, serving 430,000 species-based georeferenced data records from 8 partner databases including fish records from FishBase, cephalopods from CephBase, corals from Biogeoinformatics of Hexacorals, mollusks from the Indo-Pacific Mollusc Database and more.[6] By May 2006, the OBIS Portal was able to access 9.5 million records of 59,000 species from 112 databases,[7] and by December 2010 (at the conclusion of the Census of Marine Life) provided access to 27.7 million records representing 167,000 taxon names.[8] As at July 2018, the OBIS website states that the system provides access to over 45 million observations of nearly 120,000 marine species (the reduced number of names cited being as a result of synonym resolution, i.e. reduction of taxa recorded under multiple names to a single accepted name), based on contributions from 500 institutions from 56 countries.[9]

In 2009 OBIS was adopted as a project by International Oceanographic Data and Information Exchange (IODE) programme of the Intergovernmental Oceanographic Commission (IOC) of UNESCO and in 2011, with the cessation of funding for the Rutgers-based secretariat and portal from the Sloan Foundation, an offer of hosting by the Flanders Marine Institute (VLIZ) in Ostend, Belgium was accepted to become the long term host for the system and also the OBIS secretariat moved from Rutgers University to the IOC Project Office for IODE in Ostend from where OBIS is presently maintained and additional development is carried out. The web address changed to [1]. OBIS is thus now located in Ostend, in the same building which is also home to VLIZ. VLIZ maintains two taxonomic databases, the World Register of Marine Species and IRMNG, the Interim Register of Marine and Nonmarine Genera, both of which feed into taxonomic decisions used to control the display of species-based information in OBIS and also provide the taxonomic hierarchy via which OBIS content can be navigated. OBIS is currently under the direction of IODE with advice from a steering group, the IODE Steering Group for OBIS (SG-OBIS); operational activities are directed by an OBIS Executive Committee (OBIS-EC) with support from various OBIS Task Teams and ad-hoc OBIS project teams. The OBIS secretariat, hosted at the UNESCO/IOC project office for IODE in Ostend (Belgium), includes the OBIS project manager and data manager and in addition to maintaining the OBIS system also provides training and technical assistance to its data providers, guides new data standards and technical developments, and encourages international cooperation to foster the group benefits of the network.[10]

Data available via OBIS cover all groups of organisms that have any association with marine or estuarine habitats, also including shorelines and the atmosphere above the ocean, such as marine vertebrates (fishes, marine mammals, turtles, seabirds, etc.); marine invertebrates (including zooplankton); marine bacteria; and marine plants (e.g. phytoplankton, seaweeds, mangroves).

OBIS portal

[edit]

As available web technologies have developed, the OBIS Portal has been through a number of iterations since its inception in 2002. Initially the system retrieved remote data in real time in response to a user query and used the KGS Mapper to visualize the results. In 2004, centralized metadata indexing and cacheing was introduced leading to faster and more reliable results, and the c-squares mapper was added to options for data visualization.[11] In 2010, a full web GIS based system was introduced for the first time along with a new version of the web site which resulted in considerably more detailed and flexible presentation of search results along with a number of new search options.[12] In April 2018, funding was announced to develop a new "2.0" version of OBIS with improved capabilities.,[13] and is released on 29 January 2019.[14] The website URL changed from iobis.org to obis.org.

Regional OBIS nodes

[edit]

Over the period 2004–present, an international network of Regional OBIS Nodes has also been established, that are facilitating the connection of data sources in their region to the master OBIS data network and also increasingly provide specialised services or views of OBIS data to users in their particular region.

Hosted by Belgian Biodiversity Platform, Brussels and by Flanders Marine Institute, Ostend. Managed by Bruno Danis
Hosted by Centro Nacional Patagonico - (CENPAT) - CONICET. Managed by Mirtha Lewis
Hosted by Commonwealth Scientific and Industrial Research Organisation - Oceans and Atmosphere. Managed by Dave Watts
Hosted by Centre of Marine Biodiversity and Bedford Institute of Oceanography. Managed by Bob Branton
Hosted by Institute of Oceanology. Managed by Sun Xiaoxia
Hosted by Vlaams Instituut voor de Zee. Managed by Ward Appeltans
Hosted by National Chemical Laboratory and National Institute of Oceanography. Managed by Baba Ingole
Hosted by National Institute for Environmental Studies. Managed by Junko Shimura
Hosted by National Institute of Water & Atmospheric Research. Managed by Don Robertson
Hosted by Southern African Data Centre for Oceanography. Managed by Marten Grundlingh
Hosted by ASEAN Centre for Biodiversity. Managed by Christian Elloran
Hosted by University of Concepcion. Managed by Ruben Escribando
Hosted by University of Sao Paulo (USP) and Reference Center on Environmental Information (CRIA. Managed by Fabio Lang Da Silvera
Hosted by United States Geological Survey (USGS). Managed by Abby Benson.

See also

[edit]

Selected publications about OBIS

[edit]

References

[edit]
  1. ^ OBIS website (visited 18 July 2018)
  2. ^ Grassle, J.F. and Stocks, K.I., 1999. "A Global Ocean Biogeographic Information System (OBIS) for the Census of Marine Life." Oceanography 12(3): 12-14.
  3. ^ Oceanography Volume 13, no. 3, November 2000. Special Issue: Ocean Biogeographic Information System.
  4. ^ Grassle, J.F. 2000. "The Ocean Biogeographic Information System (OBIS): an on-line, worldwide atlas for accessing, modeling and mapping marine biological data in a multidimensional geographic context." Oceanography 13(3): 5-7.
  5. ^ Zhang, Y. and Grassle, J.F. 2003. "A portal for the Ocean Biogeographic Information System." Oceanologica Acta 25(5): 193-197.
  6. ^ "www.iobis.org: archived version, 20 March 2002". Archived from the original on 20 March 2002. Retrieved 20 March 2002.
  7. ^ "www.iobis.org: archived version, 2 May 2006". Archived from the original on 2 May 2006. Retrieved 2 May 2006.
  8. ^ www.obis.org: archived version, 13 December 2010
  9. ^ About OBIS: archived version, 5 July 2018
  10. ^ About OBIS: Governance
  11. ^ Tony Rees and Phoebe Zhang, 2007. "Evolving concepts in the architecture and functionality of OBIS, the Ocean Biogeographic Information System". in Vanden Berghe, E. et al. (ed.) Proceedings of Ocean Biodiversity Informatics: an international conference on marine biodiversity data management Hamburg, Germany, 29 November-1 December, 2004. IOC Workshop Report, 202, VLIZ Special Publication 37: pp. 167-176.
  12. ^ Ei Fujioka et al., 2012. "Advancing global marine biogeography research with open-source GIS software and cloud computing." Transactions in GIS 16(2): 143–160.
  13. ^ "IOC invests in OBIS2.0, a major re-engineering of the OBIS platform",
  14. ^ "OBIS 2.0 released",
[edit]

OBIS International Portal

[edit]

Regional OBIS nodes

[edit]

Thematic nodes

[edit]

Parent project

[edit]

History

[edit]
Retrieved from "https://en.wikipedia.org/enwiki/w/index.php?title=Ocean_Biodiversity_Information_System&oldid=1257926219"