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{{Short description|Family of archaea}}
{{Taxobox
{{automatic taxobox
| domain = [[Archaea]]
⚫
| taxon = Pyrodictiaceae
| regnum = [[Crenarchaeota]]
⚫
| authority = Burggraf, Huber & Stetter 1997
| phylum = [[Crenarchaeota]]
| classis = [[Thermoprotei]]
| ordo = [[Desulfurococcales]]
⚫
| familia = '''Pyrodictiaceae'''
⚫
| famnilia_authority = Burggraf, Huber & Stetter, 1997
| subdivision_ranks = [[Genus (biology)|Genera]]
| subdivision_ranks = [[Genus (biology)|Genera]]
| subdivision =
| subdivision =
* ''[[Geogemma]]'' <small>Kashefi et al. 2006</small>
* "''[[Geogemma]]''"
* ''[[Hyperthermus]]'' <small>Zillig et al. 1991</small>
* ''[[Hyperthermus]]''
* ''[[Pyrodictium]]'' <small>Stetter et al. 1984</small>
* ''[[Pyrodictium]]''
* ''[[Pyrofollis]]''
⚫
* ''[[Pyrolobus]]'' <small>Blöchl et al. 1999</small>
* ''[[Pyrolobus]]''
}}
}}


The '''Pyrodictiaceae''' are a [[family (biology)|family]] of disc-shaped [[Anaerobic organism|anaerobic]] microorganisms belonging to the order [[Desulfurococcales]], in the domain [[Archaea]]. Members of this family are distinguished from the other family ([[Desulfurococcaceae]]) in the order Desulfurococcales by having an optimal growth temperature above 100&nbsp;°C, rather than below 100&nbsp;°C.<ref>{{cite journal|last = Itoh|first = T.|author2=K. Suzuki |author3=P. C. Sanchez |author4=T. Nakasel |title = Caldisphaera lagunensis gen. nov., sp. nov., a novel thermoacidophilic crenarchaeote isolated from a hot spring at Mt Maquiling, Philippines|journal = International Journal of Systematic and Evolutionary Microbiology|volume = 53|pages = 1149–1154|publisher = |date = 2003|url = http://ijs.sgmjournals.org/cgi/reprint/53/4/1149?ck=nck|doi = 10.1099/ijs.0.02580-0|pmid = 12892143|issue = Pt 4}}</ref>
The '''Pyrodictiaceae''' are a [[family (biology)|family]] of disc-shaped [[Anaerobic organism|anaerobic]] microorganisms belonging to the order [[Desulfurococcales]], in the domain [[Archaea]]. Members of this family are distinguished from the other family ([[Desulfurococcaceae]]) in the order Desulfurococcales by having an optimal growth temperature above 100&nbsp;°C, rather than below 100&nbsp;°C.<ref>{{cite journal|last = Itoh|first = T.|author2 = K. Suzuki|author3 = P. C. Sanchez|author4 = T. Nakasel|title = Caldisphaera lagunensis gen. nov., sp. nov., a novel thermoacidophilic crenarchaeote isolated from a hot spring at Mt Maquiling, Philippines|journal = International Journal of Systematic and Evolutionary Microbiology|volume = 53|pages = 1149–1154|date = 2003|doi = 10.1099/ijs.0.02580-0|pmid = 12892143|issue = Pt 4|doi-access = free}}</ref>


==Phylogeny==
==Phylogeny==
The currently accepted taxonomy is based on the [[List of Prokaryotic names with Standing in Nomenclature]] (LPSN)<ref>{{cite web |author = J.P. Euzéby | url=http://www.bacterio.cict.fr/classifphyla.html#Crenarchaeota |title=Pyrodictiaceae | accessdate=2011-11-17 |publisher=[[List of Prokaryotic names with Standing in Nomenclature]] (LPSN)}}</ref> and [[National Center for Biotechnology Information]] (NCBI)<ref>{{cite web |author = Sayers |display-authors = etal| url=http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=2307&lvl=3&lin |title=Pyrodictiaceae |accessdate=2011-06-05 |publisher=[[National Center for Biotechnology Information]] (NCBI) taxonomy database}}</ref>
The currently accepted taxonomy is based on the [[List of Prokaryotic names with Standing in Nomenclature]] (LPSN)<ref>{{cite web | author=J.P. Euzéby | url=http://www.bacterio.cict.fr/classifphyla.html#Crenarchaeota | title=Pyrodictiaceae | accessdate=2011-11-17 | publisher=[[List of Prokaryotic names with Standing in Nomenclature]] (LPSN) | url-status=dead | archiveurl=https://web.archive.org/web/20130127030659/http://www.bacterio.cict.fr/classifphyla.html#Crenarchaeota | archivedate=2013-01-27 }}</ref> and [[National Center for Biotechnology Information]] (NCBI).<ref>{{cite web |author = Sayers |display-authors = etal| url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=2307&lvl=3&lin |title=Pyrodictiaceae |accessdate=2011-06-05 |publisher=[[National Center for Biotechnology Information]] (NCBI) taxonomy database}}</ref>
and the phylogeny is based on 16S rRNA-based LTP release 106 by [[The All-Species Living Tree Project]].<ref>[[All-Species Living Tree Project]].{{cite web | url=http://www.arb-silva.de/fileadmin/silva_databases/living_tree/LTP_release_106/LTPs106_SSU_tree.pdf | title=16S rRNA-based LTP release 106 (full tree) | publisher=[[Silva Comprehensive Ribosomal RNA Database]] | accessdate=2011-11-17}}</ref>


{| class="wikitable"
{{Clade
|-
! colspan=1 | 16S rRNA based [[The All-Species Living Tree Project|LTP]]_06_2022<ref>{{cite web|title=The LTP |url=https://imedea.uib-csic.es/mmg/ltp/#LTP| access-date=10 May 2023}}</ref><ref>{{cite web|title=LTP_all tree in newick format| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_all_06_2022.ntree |access-date=10 May 2023}}</ref><ref>{{cite web|title=LTP_06_2022 Release Notes| url=https://imedea.uib-csic.es/mmg/ltp/wp-content/uploads/ltp/LTP_06_2022_release_notes.pdf |access-date=10 May 2023}}</ref>
! colspan=1 | 53 marker proteins based [[Genome Taxonomy Database|GTDB]] 09-RS220<ref name="about">{{cite web |title=GTDB release 09-RS220 |url=https://gtdb.ecogenomic.org/about#4%7C |website=[[Genome Taxonomy Database]]|access-date=10 May 2024}}</ref><ref name="tree">{{cite web |title=ar53_r220.sp_label |url=https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/ar53_r220.sp_labels.tree |website=[[Genome Taxonomy Database]]|access-date=10 May 2024}}</ref><ref name="taxon_history">{{cite web |title=Taxon History |url=https://gtdb.ecogenomic.org/taxon_history/ |website=[[Genome Taxonomy Database]]|access-date=10 May 2024}}</ref>
|-
| style="vertical-align:top|
{{Clade|style=font-size:90%; line-height:90%
|1={{clade
|1={{clade
⚫
|1={{clade
⚫
|1=?''[[Pyrolobus fumarii]]'' <small>Blöchl et al. 1999</small>
|label2=&nbsp; ?''[[Geogemma]]'' ♠
|1=''[[Pyrolobus fumarii]]''
⚫
|2=''[[Pyrodictium brockii]]'' <small>Stetter et al. 1984</small>
}}
|2={{clade
|2={{clade
⚫
|1=''[[Hyperthermus butylicus]]''
⚫
|1=''[[Geogemma indica|G. indica]]'' ♠ <small>Kashefki et al. 2006</small> (type sp.)
|2={{clade
⚫
|2=''[[Geogemma pacifica|G. pacifica]]'' ♠ <small>Kashefki et al. 2006</small>
⚫
|label1=''[[Pyrodictium]]''
|1={{clade
|1=''[[Pyrodictium occultum|P. occultum]]''
|2={{clade
⚫
|1=''[[Pyrodictium abyssi|P. abyssi]]'' <small>Pley and Stetter 1991</small>
|2=''[[Pyrodictium delaneyi|P. delaneyi]]''
}}
}}
}}
}}
}}
}}
⚫
|3=''[[Hyperthermus butylicus]]'' <small>Zillig et al. 1991</small>
}}
⚫
|label4=&nbsp; ''[[Pyrodictium]]''
|
⚫
|4={{clade
{{Clade|style=font-size:90%; line-height:90%
⚫
|1=''[[Pyrodictium abyssi|P. abyssi]]'' <small>Pley and Stetter 1991</small>
|1={{clade
|2=''[[Pyrodictium brockii|P. brockii]]'' <small>Stetter et al. 1984</small>
|3=''[[Pyrodictium occultum|P. occultum]]'' <small>Stetter et al. 1984</small> (type sp.)
|1=''[[Pyrolobus fumarii]]'' <small>Blöchl et al. 1999</small>
|2={{clade
⚫
|1=''[[Hyperthermus butylicus]]'' <small>Zillig et al. 1991</small>
|2={{clade
|label1=''[[Pyrodictium]]''
|1={{clade
⚫
|1=''[[Pyrodictium delaneyi|P. delaneyi]]'' <small>Lin et al. 2016</small>
⚫
|2=''[[Pyrodictium occultum|P. occultum]]'' <small>Stetter et al. 1984</small>
}}
}}
}}
}}
}}
}}
}}
}}
|}
Notes:<br/>

♠ Strain found at the [[National Center for Biotechnology Information]] (NCBI) but not listed in the [[List of Prokaryotic names with Standing in Nomenclature]] (LPSN)
==See also==
* [[List of Archaea genera]]


==References==
==References==
{{reflist|1}}
{{Reflist}}


==Further reading==
==Further reading==

===Scientific journals===
===Scientific journals===
⚫
* {{cite journal | doi = 10.1099/00207713-47-3-657 | author = Burggraf S | author2 = Huber H | author3 = Stetter KO | date = 1997 | title = Reclassification of the crenarchael orders and families in accordance with 16S rRNA sequence data | journal = Int. J. Syst. Bacteriol. | volume = 47 | pages = 657&ndash;660 | pmid = 9226896 | issue = 3| doi-access = free }}

⚫
* {{cite journal | doi = 10.1099/00207713-47-3-657 | author = Burggraf S | author2 = Huber H | author3 = Stetter KO | date = 1997 | title = Reclassification of the crenarchael orders and families in accordance with 16S rRNA sequence data | journal = Int. J. Syst. Bacteriol. | volume = 47 | pages = 657&ndash;660 | pmid = 9226896 | issue = 3}}


===Scientific books===
===Scientific books===
⚫
* {{cite book | author = Huber H | author2 = Stetter KO | date = 2001 | chapter = Order II. Desulfurococcales ord. nov. | title = Bergey's Manual of Systematic Bacteriology Volume 1: The Archaea and the deeply branching and phototrophic Bacteria | edition = 2nd | editor = DR Boone | editor2 = RW Castenholz | pages = [https://archive.org/details/bergeysmanualofs00boon/page/169 169] | publisher = Springer Verlag | location = New York | isbn = 978-0-387-98771-2 | chapter-url-access = registration | chapter-url = https://archive.org/details/bergeysmanualofs00boon/page/169 }}


{{Archaea classification}}
⚫
* {{cite book | author = Huber H | author2 = Stetter KO | date = 2001 | chapter = Order II. Desulfurococcales ord. nov. | title = Bergey's Manual of Systematic Bacteriology Volume 1: The Archaea and the deeply branching and phototrophic Bacteria | edition = 2nd | editor = DR Boone | editor2 = RW Castenholz | pages = 169 | publisher = Springer Verlag | location = New York | isbn = 978-0-387-98771-2 }}
{{Taxonbar|from=Q7263646}}

===Scientific databases===

{{Taxonomic references|taxon=Pyrodictiaceae}}

==External links==

{{Taxonomic links|microbe=yes|NCBI_taxID=2307|taxoname=Pyrodictiaceae|LSPN_letter=p|LSPN_taxoname=pyrodictiaceae}}

[[Category:Archaea taxonomic families]]
[[Category:Archaea taxonomic families]]
[[Category:Crenarchaeota]]
[[Category:Thermoproteota]]




Latest revision as of 16:22, 6 December 2024

Pyrodictiaceae
Scientific classification Edit this classification
Domain: Archaea
Kingdom: Proteoarchaeota
Superphylum: TACK group
Phylum: Thermoproteota
Class: Thermoprotei
Order: Desulfurococcales
Family: Pyrodictiaceae
Burggraf, Huber & Stetter 1997
Genera

The Pyrodictiaceae are a family of disc-shaped anaerobic microorganisms belonging to the order Desulfurococcales, in the domain Archaea. Members of this family are distinguished from the other family (Desulfurococcaceae) in the order Desulfurococcales by having an optimal growth temperature above 100 °C, rather than below 100 °C.[1]

Phylogeny

[edit]

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[2] and National Center for Biotechnology Information (NCBI).[3]

16S rRNA based LTP_06_2022[4][5][6] 53 marker proteins based GTDB 09-RS220[7][8][9]

Pyrolobus fumarii Blöchl et al. 1999

Hyperthermus butylicus Zillig et al. 1991

Pyrodictium

P. delaneyi Lin et al. 2016

P. occultum Stetter et al. 1984

See also

[edit]

References

[edit]
  1. ^ Itoh, T.; K. Suzuki; P. C. Sanchez; T. Nakasel (2003). "Caldisphaera lagunensis gen. nov., sp. nov., a novel thermoacidophilic crenarchaeote isolated from a hot spring at Mt Maquiling, Philippines". International Journal of Systematic and Evolutionary Microbiology. 53 (Pt 4): 1149–1154. doi:10.1099/ijs.0.02580-0. PMID 12892143.
  2. ^ J.P. Euzéby. "Pyrodictiaceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Archived from the original on 2013-01-27. Retrieved 2011-11-17.
  3. ^ Sayers; et al. "Pyrodictiaceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2011-06-05.
  4. ^ "The LTP". Retrieved 10 May 2023.
  5. ^ "LTP_all tree in newick format". Retrieved 10 May 2023.
  6. ^ "LTP_06_2022 Release Notes" (PDF). Retrieved 10 May 2023.
  7. ^ "GTDB release 09-RS220". Genome Taxonomy Database. Retrieved 10 May 2024.
  8. ^ "ar53_r220.sp_label". Genome Taxonomy Database. Retrieved 10 May 2024.
  9. ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2024.

Further reading

[edit]

Scientific journals

[edit]

Scientific books

[edit]


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