Jump to content

JME Molecule Editor: Difference between revisions

Edit links
From Wikipedia, the free encyclopedia
Browse history interactively
← Previous edit
Content deleted Content added
VisualWikitext
No edit summary
Citation bot (talk | contribs)
Bots
5,349,532 edits
Add: doi-access. | Use this bot. Report bugs. | Suggested by Headbomb | #UCB_toolbar
 
(16 intermediate revisions by 10 users not shown)
Line 1: Line 1:
{{Short description|Molecule editor Java applet}}
{{Infobox software
{{Infobox software
| name = JME Molecule Editor
| name = JME Molecule Editor
Line 10: Line 11:
| developer = [[Comenius University]] in Bratislava;<br />Ciba-Geigy, [[Novartis]]; Basel
| developer = [[Comenius University]] in Bratislava;<br />Ciba-Geigy, [[Novartis]]; Basel
| released = {{Start date and age|1997}}
| released = {{Start date and age|1997}}
| discontinued = <!-- no (default) or yes -->
| discontinued = yes
| latest release version = 2012.05
| latest release version = 2012.05
| latest release date = {{Start date and age|2012|05}}
| latest release date = {{Start date and age|2012|05}}
| status = Discontinued; replaced by JSME
| replaced_by = JSME
| programming language = [[Java (programming language)|Java]]
| programming language = [[Java (programming language)|Java]]
| operating system = [[Cross-platform]]
| operating system = [[Cross-platform]]
Line 21: Line 22:
| genre = [[Molecule editor]]
| genre = [[Molecule editor]]
| license = [[Proprietary software|Proprietary]] [[freeware]]
| license = [[Proprietary software|Proprietary]] [[freeware]]
| alexa =
| website = {{URL|www.molinspiration.com/jme}}
| website = {{URL|www.molinspiration.com/jme}}
| repo = <!-- {{URL|example.org}} -->
| repo = <!-- {{URL|example.org}} -->
Line 27: Line 27:
| AsOf =
| AsOf =
}}
}}
⚫
The '''JME Molecule Editor''' is a [[molecule editor]] [[Java (software platform)|Java]] [[applet]] with which users make and edit drawings of [[molecules]] and reactions (including generating substructure queries), and can display molecules within an [[HTML]] page.<ref name="Description">{{cite journal|last1=Ertl|first1=Peter|title=Molecular structure input on the web|journal=Journal of Cheminformatics|date=2010|volume=2|issue=1|pages=1|doi=10.1186/1758-2946-2-1|pmid=20298528|pmc=2827360 |doi-access=free }}</ref> The editor can generate Daylight [[simplified molecular-input line-entry system]] (SMILES) or [[Chemical table file|MDL Molfiles]] of the created structures.

⚫
The '''JME Molecule Editor''' is a [[molecule editor]] [[Java (software platform)|Java]] [[applet]] with which users make and edit drawings of [[molecules]] and reactions (including generating substructure queries), and can display molecules within an [[HTML]] page.<ref name="Description">{{cite journal|last1=Ertl|first1=Peter|title=Molecular structure input on the web|journal=Journal of Cheminformatics|date=2010|volume=2|issue=1|pages=1|doi=10.1186/1758-2946-2-1|pmid=20298528|pmc=2827360}}</ref> The editor can generate Daylight [[simplified molecular-input line-entry system]] (SMILES) or [[Chemical table file|MDL Molfiles]] of the created structures.


The JME Editor was written by Peter Ertl while at [[Comenius University]] in Bratislava, and then at Ciba-Geigy, later merged with Sandoz Laboratories, to form [[Novartis]] International AG, in [[Basel]], Switzerland.
The JME Editor was written by Peter Ertl while at [[Comenius University]] in Bratislava, and then at Ciba-Geigy, later merged with Sandoz Laboratories, to form [[Novartis]] International AG, in [[Basel]], Switzerland.
Line 47: Line 46:
| released = {{Start date and age|2013}}
| released = {{Start date and age|2013}}
| discontinued = <!-- no (default) or yes -->
| discontinued = <!-- no (default) or yes -->
| latest release version = 2016-07-31
| latest release version = 2017-02-26
| latest release date = {{Start date and age|2016|07|31|df=yes}}
| latest release date = {{Start date and age|2017|02|26}}
| latest preview version =
| latest preview version =
| latest preview date = <!-- {{Start date and age|YYYY|MM|DD|df=yes/no}} -->
| latest preview date = <!-- {{Start date and age|YYYY|MM|DD|df=yes/no}} -->
| status = Active
| programming language = [[JavaScript]]
| programming language = [[JavaScript]]
| operating system = [[Cross-platform]]
| operating system = [[Cross-platform]]
Line 59: Line 57:
| genre = [[Molecule editor]]
| genre = [[Molecule editor]]
| license = [[Open-source software|Open-source]] [[BSD licenses|BSD]]
| license = [[Open-source software|Open-source]] [[BSD licenses|BSD]]
| alexa =
| replaces = JME
| website = {{URL|peter-ertl.com/jsme}}
| website = {{URL|peter-ertl.com/jsme}}
| repo = <!-- {{URL|github.com/JSME}} No activity yet. Do not uncomment until there is something there. -->
| repo = <!-- {{URL|github.com/JSME}} No activity yet. Do not uncomment until there is something there. -->
Line 65: Line 63:
| AsOf =
| AsOf =
}}
}}
JME has been [[Porting|ported]] to [[JavaScript]] using the [[Google Web Toolkit]] (GWT). In analogy to JME, the JavaScript version is named JSME.<ref>{{cite journal|last1=Bienfait|first1=Bruno|last2=Ertl|first2=Peter|title=JSME: a free molecule editor in JavaScript|journal=Journal of Cheminformatics|date=2013|volume=5|issue=1|pages=24|doi=10.1186/1758-2946-5-24}}</ref> It is released as [[free and open-source software]] under a [[BSD licenses|BSD license]].
JME has been [[Porting|ported]] to [[JavaScript]] using the [[Google Web Toolkit]] (GWT). In analogy to JME, the JavaScript version is named JSME. Its interface is almost identical to that of JME,<ref>{{cite journal|last1=Bienfait|first1=Bruno|last2=Ertl|first2=Peter|title=JSME: a free molecule editor in JavaScript|journal=Journal of Cheminformatics|date=2013|volume=5|issue=1|pages=24|doi=10.1186/1758-2946-5-24|pmc=3662632|pmid=23694746 |doi-access=free }}</ref> although some cosmetic options are available.<ref name=jsmetest>{{cite web |title=JSME test page |url=http://peter-ertl.com/jsme/JSME_2017-02-26/JSME_test.html}}</ref> It is released as [[free and open-source software]] under a 3-clause [[BSD licenses|BSD license]] in the form of [[minified]] JavaScript produced by GWT.

{{As of|2017|02}}, JSME is capable of [[SMILES]], [[Chemical table file|MOL]] (original and V3000), [[InChI]] (and key), and [[Scalable Vector Graphics|SVG]] export.<ref name=jsmetest/>


== See also ==
== See also ==
Line 81: Line 81:
==Notes==
==Notes==
# {{Note|Sites}} [http://peter-ertl.com/sites-using-jme-editor.html Interesting cheminformatics services using the JME editor ]
# {{Note|Sites}} [http://peter-ertl.com/sites-using-jme-editor.html Interesting cheminformatics services using the JME editor ]
# {{Note|Users}} [http://www.molinspiration.com/jme/jmeusers.html List of institutions using JME applet]
# {{Note|Users}} [https://web.archive.org/web/20070814002409/http://www.molinspiration.com/jme/jmeusers.html List of institutions using JME applet]

{{Chemistry software}}


[[Category:Freeware]]
[[Category:Freeware]]
[[Category:Computational chemistry software]]
[[Category:Computational chemistry software]]
[[Category:Cheminformatics]]



{{chem-stub}}
{{computer-chemistry-stub}}
{{science-software-stub}}
{{science-software-stub}}

Latest revision as of 13:22, 26 November 2023

JME Molecule Editor
Original author(s)Peter Ertl
Developer(s)Comenius University in Bratislava;
Ciba-Geigy, Novartis; Basel
Initial release1997; 27 years ago (1997)
Final release
2012.05 / May 2012; 12 years ago (2012-05)
Written inJava
Operating systemCross-platform
PlatformJava
SuccessorJSME
Available inEnglish
TypeMolecule editor
LicenseProprietary freeware
Websitewww.molinspiration.com/jme

The JME Molecule Editor is a molecule editor Java applet with which users make and edit drawings of molecules and reactions (including generating substructure queries), and can display molecules within an HTML page.[1] The editor can generate Daylight simplified molecular-input line-entry system (SMILES) or MDL Molfiles of the created structures.

The JME Editor was written by Peter Ertl while at Comenius University in Bratislava, and then at Ciba-Geigy, later merged with Sandoz Laboratories, to form Novartis International AG, in Basel, Switzerland.

It is released as freeware for noncommercial use and has become a standard for molecular-structure input on the web.[1][2]

JSME

[edit]
JSME Molecule Editor
Original author(s)Peter Ertl, Bruno Bienfait
Developer(s)Novartis Institutes for Biomedical Research; Basel
Initial release2013; 11 years ago (2013)
Stable release
2017-02-26 / February 26, 2017; 7 years ago (2017-02-26)
Written inJavaScript
Operating systemCross-platform
PlatformWeb browser
PredecessorJME
Available inEnglish
TypeMolecule editor
LicenseOpen-source BSD
Websitepeter-ertl.com/jsme

JME has been ported to JavaScript using the Google Web Toolkit (GWT). In analogy to JME, the JavaScript version is named JSME. Its interface is almost identical to that of JME,[2] although some cosmetic options are available.[3] It is released as free and open-source software under a 3-clause BSD license in the form of minified JavaScript produced by GWT.

As of February 2017, JSME is capable of SMILES, MOL (original and V3000), InChI (and key), and SVG export.[3]

See also

[edit]

References

[edit]
  1. ^ Ertl, Peter (2010). "Molecular structure input on the web". Journal of Cheminformatics. 2 (1): 1. doi:10.1186/1758-2946-2-1. PMC 2827360. PMID 20298528.
  2. ^ Bienfait, Bruno; Ertl, Peter (2013). "JSME: a free molecule editor in JavaScript". Journal of Cheminformatics. 5 (1): 24. doi:10.1186/1758-2946-5-24. PMC 3662632. PMID 23694746.
  3. ^ a b "JSME test page".
[edit]

Notes

[edit]
  1. ^ Interesting cheminformatics services using the JME editor
  2. ^ List of institutions using JME applet


Stub icon

This computational chemistry-related article is a stub. You can help Wikipedia by expanding it.

Stub icon

This scientific software article is a stub. You can help Wikipedia by expanding it.

Retrieved from "https://en.wikipedia.org/enwiki/w/index.php?title=JME_Molecule_Editor&oldid=1186943081"