SAMD9: Difference between revisions

SAMD9
Identifiers
Aliases	SAMD9, C7orf5, DRIF1, NFTC, OEF1, OEF2, sterile alpha motif domain containing 9, MIRAGE, M7MLS2
External IDs	OMIM: 610456; HomoloGene: 75072; GeneCards: SAMD9; OMA:SAMD9 - orthologs
Gene location (Human)
Chr.	Chromosome 7 (human)
End	93,118,023 bp
RNA expression pattern
	Top expressed in
	amniotic fluid; ; oral cavity; ; buccal mucosa cell; ; mucosa of pharynx; ; gums; ; gingival epithelium; ; palpebral conjunctiva; ; decidua; ; epithelium of nasopharynx; ; trabecular bone;
	n/a
	More reference expression data
	; ;
	More reference expression data
Gene ontology
Molecular function	protein binding;
Cellular component	cytoplasm; intracellular membrane-bounded organelle; cytosol; early endosome;
Biological process	endosomal vesicle fusion;
	Sources:Amigo / QuickGO
Orthologs
	54809
	n/a
	ENSG00000205413
	n/a
	Q5K651
	n/a
	NM_017654; NM_001193307
	n/a
	NP_001180236; NP_060124
	n/a
	Wikidata
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Revision as of 13:01, 19 September 2023

Sterile alpha motif domain-containing protein 9 is a 1,589-amino-acid protein encoded by the SAMD9 gene.^[3] This cytoplasmic protein is a tumor suppressor that has a role in cell proliferation and the innate immune response to viral infection. Like its paralog, SAMD9-like protein (SAMD9L),^[4] its N-terminus contains a sterile alpha motif (SAM).

Deleterious mutations of this gene cause normophosphatemic familial tumoral calcinosis (NFTC).^[4] On the other hand, mutations that increase the activity of SAMD9 cause myelodysplasia, infection, restriction of growth, adrenal hypoplasia (small adrenal glands), genital phenotypes, and enteropathy (MIRAGE) syndrome.^[5] This can lead to loss of chromosome 7 as described for monosomy 7 and myelodysplastic syndrome and leukemia syndrome-2 (M7MLS2).^[6]

References

^ ^a ^b ^c GRCh38: Ensembl release 89: ENSG00000205413 – Ensembl, May 2017
^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ "Entrez Gene: SAMD9 sterile alpha motif domain containing 9".
^ ^a ^b Topaz O, Indelman M, Chefetz I, Geiger D, Metzker A, Altschuler Y, Choder M, Bercovich D, Uitto J, Bergman R, Richard G, Sprecher E (October 2006). "A deleterious mutation in SAMD9 causes normophosphatemic familial tumoral calcinosis". The American Journal of Human Genetics. 79 (4): 759–64. doi:10.1086/508069. PMC 1592555. PMID 16960814.{{cite journal}}: CS1 maint: PMC format (link)
^ Narumi S, Amano N, Ishii T, Katsumata N, Muroya K, Adachi M, Toyoshima K, Tanaka Y, Fukuzawa R, Miyako K, Kinjo S, Ohga S, Ihara K, Inoue H, Kinjo T, Hara T, Kohno M, Yamada S, Urano H, Kitagawa Y, Tsugawa K, Higa A, Miyawaki M, Okutani T, Kizaki Z, Hamada H, Kihara M, Shiga K, Yamaguchi T, Kenmochi M, Kitajima H, Fukami M, Shimizu A, Kudoh J, Shibata S, Okano H, Miyake N, Matsumoto N, Hasegawa T (July 2016). "SAMD9 mutations cause a novel multisystem disorder, MIRAGE syndrome, and are associated with loss of chromosome 7". Nature Genetics. 48 (7): 792–7. doi:10.1038/ng.3569. PMID 27182967.
^ Schwartz JR, Wang S, Ma J, Lamprecht T, Walsh M, Song G, Raimondi SC, Wu G, Walsh MF, McGee RB, Kesserwan C, Nichols KE, Cauff BE, Ribeiro RC, Wlodarski M, Klco JM (August 2017). "Germline SAMD9 mutation in siblings with monosomy 7 and myelodysplastic syndrome". Leukemia. 31 (8): 1827–1830. doi:10.1038/leu.2017.142. PMC 5540771. PMID 28487541.{{cite journal}}: CS1 maint: PMC format (link)

Maruyama K, Sugano S (January 1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID 8125298.
Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, Suyama A, Sugano S (October 1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID 9373149.
Sanger Centre, The; Washington University Genome Sequencing Cente, The (November 1998). "Toward a complete human genome sequence". Genome Research. 8 (11): 1097–108. doi:10.1101/gr.8.11.1097. PMID 9847074.
Topaz O, Indelman M, Chefetz I, Geiger D, Metzker A, Altschuler Y, Choder M, Bercovich D, Uitto J, Bergman R, Richard G, Sprecher E (October 2006). "A deleterious mutation in SAMD9 causes normophosphatemic familial tumoral calcinosis". American Journal of Human Genetics. 79 (4): 759–64. doi:10.1086/508069. PMC 1592555. PMID 16960814.
Li CF, MacDonald JR, Wei RY, Ray J, Lau K, Kandel C, Koffman R, Bell S, Scherer SW, Alman BA (April 2007). "Human sterile alpha motif domain 9, a novel gene identified as down-regulated in aggressive fibromatosis, is absent in the mouse". BMC Genomics. 8: 92. doi:10.1186/1471-2164-8-92. PMC 1855325. PMID 17407603.{{cite journal}}: CS1 maint: unflagged free DOI (link)
Dereure O (May 2007). "[SAMD9 mutation in normophosphatemic familial tumoral calcinosis]". Annales de Dermatologie et de Vénéréologie. 134 (5 Pt 1): 505. doi:10.1016/S0151-9638(07)89230-1. PMID 17507861.

This article on a gene on human chromosome 7 is a stub. You can help Wikipedia by expanding it.

[refGRCh38Ensembl-1] GRCh38: Ensembl release 89: ENSG00000205413 – Ensembl, May 2017

[2] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[entrez-3] "Entrez Gene: SAMD9 sterile alpha motif domain containing 9".

[Topaz-4] Topaz O, Indelman M, Chefetz I, Geiger D, Metzker A, Altschuler Y, Choder M, Bercovich D, Uitto J, Bergman R, Richard G, Sprecher E (October 2006). "A deleterious mutation in SAMD9 causes normophosphatemic familial tumoral calcinosis". The American Journal of Human Genetics. 79 (4): 759–64. doi:10.1086/508069. PMC 1592555. PMID 16960814.{{cite journal}}: CS1 maint: PMC format (link)

[5] Narumi S, Amano N, Ishii T, Katsumata N, Muroya K, Adachi M, Toyoshima K, Tanaka Y, Fukuzawa R, Miyako K, Kinjo S, Ohga S, Ihara K, Inoue H, Kinjo T, Hara T, Kohno M, Yamada S, Urano H, Kitagawa Y, Tsugawa K, Higa A, Miyawaki M, Okutani T, Kizaki Z, Hamada H, Kihara M, Shiga K, Yamaguchi T, Kenmochi M, Kitajima H, Fukami M, Shimizu A, Kudoh J, Shibata S, Okano H, Miyake N, Matsumoto N, Hasegawa T (July 2016). "SAMD9 mutations cause a novel multisystem disorder, MIRAGE syndrome, and are associated with loss of chromosome 7". Nature Genetics. 48 (7): 792–7. doi:10.1038/ng.3569. PMID 27182967.

[6] Schwartz JR, Wang S, Ma J, Lamprecht T, Walsh M, Song G, Raimondi SC, Wu G, Walsh MF, McGee RB, Kesserwan C, Nichols KE, Cauff BE, Ribeiro RC, Wlodarski M, Klco JM (August 2017). "Germline SAMD9 mutation in siblings with monosomy 7 and myelodysplastic syndrome". Leukemia. 31 (8): 1827–1830. doi:10.1038/leu.2017.142. PMC 5540771. PMID 28487541.{{cite journal}}: CS1 maint: PMC format (link)

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	'''Sterile alpha motif domain-containing protein 9''' is a 1,589-[[amino-acid]] [[protein]] encoded by the ''SAMD9'' [[gene]].<ref name="entrez">{{cite web \| title = Entrez Gene: SAMD9 sterile alpha motif domain containing 9\| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=54809\| accessdate = }}</ref> This [[cytoplasmic]] protein is a [[tumor suppressor]] that has a role in cell proliferation and the innate immune response to viral infection. Like its paralog, SAMD9-like protein (SAMD9L),<ref name = Topaz>{{cite journal \| vauthors = Topaz O, Indelman M, Chefetz I, Geiger D, Metzker A, Altschuler Y, Choder M, Bercovich D, Uitto J, Bergman R, Richard G, Sprecher E \| title = A deleterious mutation in SAMD9 causes normophosphatemic familial tumoral calcinosis \| journal = The American Journal of Human Genetics \| volume = 79 \| issue = 4 \| pages = 759-64 \| date = October 2006 \| pmid = 16960814 \| pmc = PMC1592555 \| doi = 10.1086/508069 \| doi-access = free }}</ref> its N-terminus contains a [[sterile alpha motif]] (SAM).		'''Sterile alpha motif domain-containing protein 9''' is a 1,589-[[amino-acid]] [[protein]] encoded by the ''SAMD9'' [[gene]].<ref name="entrez">{{cite web \| title = Entrez Gene: SAMD9 sterile alpha motif domain containing 9\| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=54809\| accessdate = }}</ref> This [[cytoplasmic]] protein is a [[tumor suppressor]] that has a role in cell proliferation and the innate immune response to viral infection. Like its paralog, SAMD9-like protein (SAMD9L),<ref name = Topaz>{{cite journal \| vauthors = Topaz O, Indelman M, Chefetz I, Geiger D, Metzker A, Altschuler Y, Choder M, Bercovich D, Uitto J, Bergman R, Richard G, Sprecher E \| title = A deleterious mutation in SAMD9 causes normophosphatemic familial tumoral calcinosis \| journal = The American Journal of Human Genetics \| volume = 79 \| issue = 4 \| pages = 759-64 \| date = October 2006 \| pmid = 16960814 \| pmc = PMC1592555 \| doi = 10.1086/508069 \| doi-access = free }}</ref> its N-terminus contains a [[sterile alpha motif]] (SAM).

	Deleterious mutations of this gene cause normophosphatemic familial tumoral calcinosis (NFTC).<ref name = Topaz/> On the other hand, mutations that increase the activity of SAMD9 cause [[myelodysplasia]], infection, restriction of growth, adrenal hypoplasia (small [[adrenal glands]]), genital phenotypes, and enteropathy (MIRAGE) syndrome.<ref>{{cite journal \| vauthors = Narumi S, Amano N, Ishii T, Katsumata N, Muroya K, Adachi M, Toyoshima K, Tanaka Y, Fukuzawa R, Miyako K, Kinjo S, Ohga S, Ihara K, Inoue H, Kinjo T, Hara T, Kohno M, Yamada S, Urano H, Kitagawa Y, Tsugawa K, Higa A, Miyawaki M, Okutani T, Kizaki Z, Hamada H, Kihara M, Shiga K, Yamaguchi T, Kenmochi M, Kitajima H, Fukami M, Shimizu A, Kudoh J, Shibata S, Okano H, Miyake N, Matsumoto N, Hasegawa T \| title = SAMD9 mutations cause a novel multisystem disorder, MIRAGE syndrome, and are associated with loss of chromosome 7 \| journal = Nature Genetics \| volume = 48 \| issue = 7 \| pages = 792-7 \| date = July 2016 \| pmid = 27182967 \| doi = 10.1038/ng.3569 }}</ref> This can lead to loss of chromosome 7 as described for [[monosomy]] 7 and myelodysplastic syndrome and [[leukemia]] syndrome-2 (M7MLS2;.<ref>{{cite journal \| vauthors = Schwartz JR, Wang S, Ma J, Lamprecht T, Walsh M, Song G, Raimondi SC, Wu G, Walsh MF, McGee RB, Kesserwan C, Nichols KE, Cauff BE, Ribeiro RC, Wlodarski M, Klco JM \| title = Germline SAMD9 mutation in siblings with monosomy 7 and myelodysplastic syndrome \| journal = Leukemia \| volume = 31 \| issue = 8 \| pages = 1827-1830 \| date = August 2017 \| pmid = 28487541 \| pmc = PMC5540771 \| doi = 10.1038/leu.2017.142 }}</ref>		Deleterious mutations of this gene cause normophosphatemic familial tumoral calcinosis (NFTC).<ref name = Topaz/> On the other hand, mutations that increase the activity of SAMD9 cause [[myelodysplasia]], infection, restriction of growth, adrenal hypoplasia (small [[adrenal glands]]), genital phenotypes, and enteropathy (MIRAGE) syndrome.<ref>{{cite journal \| vauthors = Narumi S, Amano N, Ishii T, Katsumata N, Muroya K, Adachi M, Toyoshima K, Tanaka Y, Fukuzawa R, Miyako K, Kinjo S, Ohga S, Ihara K, Inoue H, Kinjo T, Hara T, Kohno M, Yamada S, Urano H, Kitagawa Y, Tsugawa K, Higa A, Miyawaki M, Okutani T, Kizaki Z, Hamada H, Kihara M, Shiga K, Yamaguchi T, Kenmochi M, Kitajima H, Fukami M, Shimizu A, Kudoh J, Shibata S, Okano H, Miyake N, Matsumoto N, Hasegawa T \| title = SAMD9 mutations cause a novel multisystem disorder, MIRAGE syndrome, and are associated with loss of chromosome 7 \| journal = Nature Genetics \| volume = 48 \| issue = 7 \| pages = 792-7 \| date = July 2016 \| pmid = 27182967 \| doi = 10.1038/ng.3569 }}</ref> This can lead to loss of chromosome 7 as described for [[monosomy]] 7 and myelodysplastic syndrome and [[leukemia]] syndrome-2 (M7MLS2).<ref>{{cite journal \| vauthors = Schwartz JR, Wang S, Ma J, Lamprecht T, Walsh M, Song G, Raimondi SC, Wu G, Walsh MF, McGee RB, Kesserwan C, Nichols KE, Cauff BE, Ribeiro RC, Wlodarski M, Klco JM \| title = Germline SAMD9 mutation in siblings with monosomy 7 and myelodysplastic syndrome \| journal = Leukemia \| volume = 31 \| issue = 8 \| pages = 1827-1830 \| date = August 2017 \| pmid = 28487541 \| pmc = PMC5540771 \| doi = 10.1038/leu.2017.142 }}</ref>

Revision as of 13:01, 19 September 2023

References

Further reading