Scatchard equation: Difference between revisions
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| ⚫ | The '''Scatchard equation''' is an equation used in [[molecular biology]] for calculating the [[Receptor affinity|affinity]] constant of a [[ligand]] with a [[protein]].<ref>{{Cite journal|last=Scatchard|first=George|year=1949|title=The Attraction of Proteins for Small Molecules and Ions|url=http://onlinelibrary.wiley.com/wol1/doi/10.1111/j.1749-6632.1949.tb27297.x/abstract|journal=Annals of the New York Academy of Sciences|volume=51|issue=4|pages=660–672|doi=10.1111/j.1749-6632.1949.tb27297.x}}</ref> |
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| ⚫ | The '''Scatchard equation''' is an equation for calculating the [[Receptor affinity|affinity]] constant of a [[ligand]] |
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==Equation== |
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The Scatchard equation is given by |
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:<math>\frac{r}{[L]} = nK_a - rK_a </math> |
:<math>\frac{r}{[L]} = nK_a - rK_a </math> |
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:<math>K_a = \frac{[LP]}{[L][P]} </math> |
:<math>K_a = \frac{[LP]}{[L][P]} </math> |
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The Scatchard equation is sometimes referred to as the Rosenthal-Scatchard equation. |
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Plotting these data, ''r/[L]'' vs ''r'', yields the Scatchard plot with a slope ''-K<sub>a</sub>'' and a Y-intercept of ''nK<sub>a</sub>''. Relative binding affinities between two sites can be distinguished with a line showing identical affinity and a curve showing different affinities. |
Plotting these data, ''r/[L]'' vs ''r'', yields the Scatchard plot with a slope ''-K<sub>a</sub>'' and a Y-intercept of ''nK<sub>a</sub>''. Relative binding affinities between two sites can be distinguished with a line showing identical affinity and a curve showing different affinities. |
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==Scatchard plot== |
==Scatchard plot== |
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Revision as of 16:49, 19 October 2016
The Scatchard equation is an equation used in molecular biology for calculating the affinity constant of a ligand with a protein.[1]
It is named after the American chemist George Scatchard[2] and is sometimes referred to as the Rosenthal-Scatchard equation.[citation needed]
Equation
The Scatchard equation is given by
![{\displaystyle {\frac {r}{[L]}}=nK_{a}-rK_{a}}](https://wikimedia.org/enwiki/api/rest_v1/media/math/render/svg/36150f90b0507618be8d5032c804d27454813b1e)
where
![{\displaystyle r={\frac {[L]_{bound}}{[P]_{0}}}}](https://wikimedia.org/enwiki/api/rest_v1/media/math/render/svg/f97c4270c61bcc2d7186654c90982c61db7a602f)
is the ratio of the concentration of bound ligand to total available binding sites, and n is the number of binding sites per protein molecule.
Ka is the association (affinity) constant from the equation
![{\displaystyle K_{a}={\frac {[LP]}{[L][P]}}}](https://wikimedia.org/enwiki/api/rest_v1/media/math/render/svg/51745a9edac2ae485a9dd185f8f680f3ea953cbc)
Plotting these data, r/[L] vs r, yields the Scatchard plot with a slope -Ka and a Y-intercept of nKa. Relative binding affinities between two sites can be distinguished with a line showing identical affinity and a curve showing different affinities.
Scatchard plot
A Scatchard plot is a plot of the ratio of concentrations of bound ligand to unbound ligand versus the bound ligand concentration. It is a method for analyzing data for freely reversible ligand/receptor binding interactions. The plot yields a straight line of slope -K, where K is the affinity constant for ligand binding. The affinity constant is the inverse of the dissociation constant. The intercept on the X axis is Bmax.[2] It is sometimes the case that binding data does not form a straight line when plotted in a Scatchard plot. Such is the case when ligand bound to substrate is not allowed to achieve equilibrium before the binding is measured or binding is cooperative.[3]
In a Scatchard plot, assumptions of independence in linear regression model is violated because B (bound ligand) is used in the X and Y axes. Generally, Scatchard and Lineweaver-Burk plots are outdated. Their original intention was to transform the data into linear representations of the original data such that linear regression methods could be applied. These transformations frequently distort experimental error and can be misleading if results are not accurate.[4]
References
- ^ Scatchard, George (1949). "The Attraction of Proteins for Small Molecules and Ions". Annals of the New York Academy of Sciences. 51 (4): 660–672. doi:10.1111/j.1749-6632.1949.tb27297.x.
- ^ a b Voet, Donald; (1995). Biochemistry, 3rd Ed. John Wiley & Sons, Inc. ISBN 0-471-39223-5.
{{cite book}}: CS1 maint: extra punctuation (link) CS1 maint: multiple names: authors list (link) - ^ Gross, David. Physical Chemistry: Applications in the Life Sciences.
- ^ [failed verification] "GraphPad FAQ: Saturation Binding Curves and Scatchard Plots".
Further reading
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