Haplogroup J-M172: Difference between revisions
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| origin-date=15000-22000 ybp<ref name=semino>{{cite journal| pmc=1181965 | pmid=15069642 | doi=10.1086/386295 | volume=74 | title=Origin, diffusion, and differentiation of Y-chromosome haplogroups E and J: inferences on the neolithization of Europe and later migratory events in the Mediterranean area | date=May 2004 | journal=Am. J. Hum. Genet. | pages=1023–34 | vauthors=Semino O, Magri C, Benuzzi G ''et al.''}}</ref>(TMRCA 19-24000ybp<ref name="nature.com">{{Cite web|title = TMRCAs of major haplogroups in Europe estimated using two methods. : Large-scale recent expansion of European patrilineages shown by population resequencing : Nature Communications : Nature Publishing Group|url = http://www.nature.com/ncomms/2015/150519/ncomms8152/fig_tab/ncomms8152_T1.html|website = www.nature.com|accessdate = 2015-05-20}}</ref>) |
| origin-date=15000-22000 ybp<ref name=semino>{{cite journal| pmc=1181965 | pmid=15069642 | doi=10.1086/386295 | volume=74 | title=Origin, diffusion, and differentiation of Y-chromosome haplogroups E and J: inferences on the neolithization of Europe and later migratory events in the Mediterranean area | date=May 2004 | journal=Am. J. Hum. Genet. | pages=1023–34 | vauthors=Semino O, Magri C, Benuzzi G ''et al.''}}</ref>(TMRCA 19-24000ybp<ref name="nature.com">{{Cite web|title = TMRCAs of major haplogroups in Europe estimated using two methods. : Large-scale recent expansion of European patrilineages shown by population resequencing : Nature Communications : Nature Publishing Group|url = http://www.nature.com/ncomms/2015/150519/ncomms8152/fig_tab/ncomms8152_T1.html|website = www.nature.com|accessdate = 2015-05-20}}</ref>) |
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| origin-place=[[Western Asia]]<ref>''The extent of differentiation of Hg J, observed both with the biallelic and microsatellite markers, points to the Middle East as its likely homeland. In this area, J-M172 and J-M267 are equally represented and show the highest degree of internal variation, indicating that it is most likely that these subclades also arose in the Middle East.'' {{harv|Di Giacomo|2004}}</ref> |
| origin-place=[[Western Asia]]<ref>''The extent of differentiation of Hg J, observed both with the biallelic and microsatellite markers, points to the Middle East as its likely homeland. In this area, J-M172 and J-M267 are equally represented and show the highest degree of internal variation, indicating that it is most likely that these subclades also arose in the Middle East.'' {{harv|Di Giacomo|2004}}</ref> |
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In human genetics, Haplogroup J-M172 or J2[Phylogenetics 1] is a Y-chromosome haplogroup which is a subclade (branch) of haplogroup J-P209.[Phylogenetics 2] Haplogroup J-M172 is common in modern populations in Western Asia, Central Asia, South Asia, Europe and North Africa. It is thought that J-M172 may have originated between the Caucasus Mountains, Mesopotamia and the Levant.[10][11]
It is further divided into two complementary clades, J-M410 and J-M12 (M12, M102, M221, M314).
Origins
The date of origin for haplogroup J-M172 was estimated by Batini et al in 2015 as between 19,000 and 24,000 years before present (BP).[2] Samino et al in 2004 dated the origin of the parent haplogroup, J-P209, to between 18,900 and 44,500 YBP.[12]
It is likely that J2 men had settled over most of Anatolia, the South Caucasus and Iran by the end of the Last Glaciation 12,000 years ago.[13]
Zalloua and Wells 2004 and al-Zaheri 2003 uncovered the earliest known migration of J2, from Sumeria to Canaan.[10][11] In 2001, Nebel et al. found that, "According to Underhill et al. (2000), Eu 9 (H58) evolved from Eu 10 (H71) through a T→G transversion at M172 (emphasis added)," and that in today's populations, Eu 9 (the post-mutation form of M172) is strongest in the Caucasus, Asia Minor and the Levant, whilst Eu 10 becomes stronger and replaces the frequency of Eu 9 as one moves south into the Arabian Peninsula,[14] so that people from the Caucasus met with Arabs near and between Mesopotamia (formerly Sumeria) and the Negev Desert, as "Arabisation" spread from Arabia to the Levant and Turkey, as well as many peoples (e.g. Jews, Armenians, Lebanese) having returned from diasporas.
Per research by Di Giacomo 2004, J-M172 haplogroup spread into Southern Europe" from either the Levant or Anatolia, likely parallel to the development of agriculture.[15] As to the timing of its spread into Europe, Di Giacomo points to events which post-date the Neolithic, in particular the demographic floruit associated with the rise of the Ancient Greek world. Semino et al. derived older age estimates for overall J2 (having used the Zhivotovsky method c.f. Di Giacomo), postulating its initial spread with Neolithic farmers from the Near East. However, its subclade distribution, showing localized peaks in the Southern Balkans, southern Italy, north/central Italy and the Caucasus, does not conform to a single 'wave-of-advance' scenario, betraying a number of still poorly understood post-Neolithic processes which created its current pattern. Like Di Giacomo, the Bronze Age southern Balkans was suggested by Semino 2004 to have been an important vector of spread.[12]
Distribution
Haplogroup J-M172 is found mainly in the Fertile Crescent, the Caucasus (Nasidze 2003) , Anatolia, Italy, the Mediterranean littoral, and the Iranian plateau(Semino 2004) .
The highest reported frequency of J-M172 ever was 87.4%, among Ingush in Malgobek (Balanovsky 2011) .
More specifically it is found in Iraq (Al-Zahery 2003) , Kuwait (Qassemi 2009) , Syria (Luis 2004) , Lebanon (Zalloua 2008l) , Turkey (Cinnioglu 2004) , Georgia (Nasidze 2003) , Azerbaijan (Di Giacomo 2004) , North Caucasus (Nasidze 2004) , Armenia (Wells 2001) , Iran (Nasidze 2004) , Israel (Semino 2004) , Palestine (Semino 2004) , Cyprus (Capelli 2005) , Greece (Martinez 2007) , Albania (Semino 2000) , Italy (Capelli 2007) , and Spain (Di Giacomo 2003) , and more frequently in Iraqis 24%Al-Zahery 2011 , Chechens 51.0%-58.0% (Balanovsky 2011) , Georgians 21% (Wells 2001) -72% (Wells 2001) , Lebanese 30%(Semino 2004) , Ossetians 24%(Nasidze 2004) , Balkars 24% (Battaglia 2008) , Syrians 23% (Luis 2004) , Turks 13% (Cinnioglu 2004) -40% (Semino 2000) , Cypriots 12.9% (El-Sibai 2009) -37%(Capelli 2005) , Armenians 21% (Wells 2001) -24% (Nasidze 2004) , Circassians 21.8%,(Balanovsky 2011) Iranians 10% (Nasidze 2004) -25%, (Wells 2001) Albanians 16% (Battaglia 2008) -24%, (Semino 2000) Italians 9%-36% (Capelli 2007) , Sephardi Jews 15%(Nebel 2001) -29%, (Semino 2004) Maltese 21%(Capelli 2005) , Palestinians 17%(Semino 2004) , Saudis 14% (Abu-Amero 2009) , Jordanians 14%, Omanis 10%-15% (Di Giacomo 2004) and (Luis 2004) , and North Indian Shia Muslim 18% (Eaaswarkhanth 2009) .
North Africa
Country/Region | Sampling | N | J-M172 | Study |
Tunisia | Tunisia | 62 | 8 | El-Sibai 2009 |
Tunisia | Sousse | 220 | 8.2 | Fadhlaoui-Zid 2014 |
Algeria | Oran | 102 | 4.9 | Robino 2008 |
Egypt | 124 | 7.6 | El-Sibai 2009 | |
Egypt | 147 | 12.0 | Abu-Amero 2009 | |
Morocco | 221 | 4.1 | Fregel 2009 | |
North Africa | Algeria, Tunisia | 202 | 3.5 | Fregel 2009 |
Central Asia
Country/Region | Sampling | N | J-M172 | Study |
Afghanistan | Hazara | 60 | 26.6 | Haber 2012 |
Afghanistan | Uzbeks | 126 | 16 | Di Cristofaro 2013 |
Bukhara | Uzbeks | 58 | 16 | Wells 2001 |
Dushanbe | Tajiks | 16 | 31 | Wells 2001 |
Xinjiang, China | Uyghurs | 50 | 34 | Shou 2010 |
Xinjiang, China | Uzbeks | 23 | 30.4 | Shou 2010 |
Xinjiang, China | Tajiks | 31 | 16.1 | Shou 2010 |
Kazakhstan | Kazakhs | 30 | 13.3 | Karafet 2001 |
Kazakhstan | Uyghurs | 41 | 20 | Wells 2001 |
Samarkand | Uzbeks | 45 | 16 | Wells 2001 |
Samarkand | Tajiks | 40 | 20 | Wells 2001 |
Surkhandarya | Uzbeks | 68 | 16 | Wells 2001 |
Tajikistan | Yaghnobis | 31 | 32 | Wells 2001 |
Tajikistan | Tajiks | 38 | 18.4 | Wells 2001 |
Turkmenistan | Turkmens | 30 | 17 | Wells 2001 |
Uzbekistan | Uzbeks | 366 | 13.4 | Wells 2001 |
J-M172 is found at moderate frequencies among Central Asian people such as Uyghurs, Uzbeks, Turkmens, Tajiks, Kazakhs, and Yaghnobis. According to the genetic study in Northeast China by Shou et al. (2010), a notable high frequency of J-M172 is observed particularly in Uyghurs 34% and Uzbeks 30.4% in Xinjiang, China.
The haplogroup has an ancient presence in Central Asia and seems to have preceded the spread of Islam (Shou 2010) . In addition, the immediate ancestor of J-M172, namely J* (J-M304*, a.k.a. J-P209*, J-12f2.1*) is also found among Xibo, Kazakh, Dongxiang and Uzbek people in Northwest China.
In 2015, two ancient samples belonging to J-M172 or J-M410 (J2a) were found at two different archaeological sites in Altai, eastern Russia: Kytmanovo and Sary-bel kurgan. Both of the ancient samples are related to Iron Age cultures in Altai. Sary-bel J2/J2a is dated to 50 BC whereas Kytmanovo sample is dated to 721-889 AD. Genetic admixture analysis of these samples also suggests that the individuals were more closely related to West Eurasians than other Altaians from the same period, although they also seem to be related to present-day Turkic peoples of the region.[16][17][18]
Europe
Country/Region | Sampling | N | J-M172 | Study |
Albania | 55 | 19.9 | Battaglia 2009 | |
Bosnia-Herzegovina | Serbs | 81 | 8.7 | Battaglia 2009 |
Cyprus | 164 | 12.9 | El-Sibai 2009 | |
Greece | Crete | 143 | 35 | El-Sibai 2009 |
Iberia | 655 | 7 | Fregel 2009 | |
Iberia | 1140 | 7.7 | Adams 2008 | |
Italy | Sicily | 212 | 22.6 | El-Sibai 2009 |
Italy | Mainland | 699 | 20 | Capelli 2007 |
Italy | Central Marche | 59 | 35.6 | Capelli 2007 |
Italy | West Calabria | 57 | 35.1 | Capelli 2007 |
Italy | Val Badia | 34 | 8.8 | Capelli 2007 |
Malta | 90 | 21.1 | El-Sibai 2009 | |
Portugal | North, Center, South | 303 | 6.9 | El-Sibai 2009 |
Portugal | Tras-os-Montes (Jews) | 57 | 24.5 | Nogueiro 2010 |
Sardinia | 81 | 9.9 | El-Sibai 2009 | |
Spain | Mallorca | 62 | 8.1 | El-Sibai 2009 |
Spain | Sevilla | 155 | 7.8 | El-Sibai 2009 |
Spain | Leon | 60 | 5 | El-Sibai 2009 |
Spain | Ibiza | 54 | 3.7 | El-Sibai 2009 |
Spain | Cantabria | 70 | 2.9 | El-Sibai 2009 |
Spain | Galicia | 292 | 13 | Brion 2004 |
Spain | Canary Islands | 652 | 10.5 | Fregel 2009 |
In Europe, the frequency of Haplogroup J-M172 drops as one moves northward away from the Mediterranean. In Italy, J-M172 is found with regional frequencies ranging between 9% and 36% (Capelli 2007) . In Greece, it is found with regional frequencies ranging between 10% and 48%. Approximately 24% of Turkish men are J-M172 according to a recent study, (Cinnioglu 2004) with regional frequencies ranging between 13% and 40% (Semino 2000) . Combined with J-M267, up to half of the Turkish population belongs to Haplogroup J-P209.
It has been proposed that haplogroup subclade J-M410 was linked to populations on ancient Crete by examining the relationship between Anatolian, Cretan, and Greek populations from around early Neolithic sites in Crete. Haplogroup J-M12 was associated with Neolithic Greece (ca. 8500 - 4300 BCE) and was reported to be found in modern Crete (3.1%) and mainland Greece (Macedonia 7.0%, Thessaly 8.8%, Argolis 1.8%) (King 2008) .
North Caucasus
Country/Region | Sampling | N | J-M172 | Study |
Caucasus | Abkhaz | 58 | 13.8 | Balanovsky 2011 |
Caucasus | Avar | 115 | 6 | Balanovsky 2011 |
Caucasus | Chechen | 330 | 57 | Balanovsky 2011 |
Caucasus | Circassians | 142 | 21.8 | Balanovsky 2011 |
Caucasus | Dargins | 101 | 1 | Balanovsky 2011 |
Caucasus | Ingush | 143 | 88.8 | Balanovsky 2011 |
Caucasus | Kaitak | 33 | 3 | Balanovsky 2011 |
Caucasus | Kumyks | 73 | 21 | Yunusbayev 2011 |
Caucasus | Kubachi | 65 | 0 | Balanovsky 2011 |
Caucasus | Lezghins | 81 | 2.5 | Balanovsky 2011 |
Caucasus | Ossets | 357 | 16 | Balanovsky 2011 |
Caucasus | Shapsug | 100 | 6 | Balanovsky 2011 |
Caucasus | 1525 | 28.1 | Balanovsky 2011 |
J-M172 is found at very high frequencies in certain peoples of the Caucasus: among the Ingush 87.4% (Balanovsky 2011) , Chechens 55.2% (Balanovsky 2011) , Georgians 21%-72%, (Wells 2001) , Azeris 24% (Di Giacomo 2004) -48%, (Wells 2001) Abkhaz 25%, (Nasidze 2004) Balkars 24% (Battaglia 2008) , Ossetians 24% (Nasidze 2004) , Armenians 21% (Wells 2001) -24% (Nasidze 2004) , Circassians 21.8% (Balanovsky 2011) , and other groups ( Nasidze 2004 and Nasidze 2003 ).
West Asia
Country/Region | Sampling | N | J-M172 | Study |
Jewish | Ashkenazim Jewish | 442 | 19 | Behar 2004 |
Iran | 92 | 25 | El-Sibai 2009 | |
Iraq | 154 | 24 | Al-Zahery 2011[19] | |
Israel | Akka | 101 | 18.6 | El-Sibai 2009 |
Jordan | 273 | 14.6 | El-Sibai 2009 | |
Lebanon | 951 | 29.4 | El-Sibai 2009 | |
Oman | 121 | 10.0 | Abu-Amero 2009 | |
Pakistan | 176 | 11.9 | Abu-Amero 2009 | |
Pakistan | Chitral District | Firasat 2007 | ||
Qatar | 72 | 8.3 | El-Sibai 2009 | |
Saudi Arabia | 157 | 14 | Abu-Amero 2009[20] | |
Syria | Syria | 554 | 20.8 | El-Sibai 2009 |
Turkey | 523 | 24.2 | El-Sibai 2009 | |
UAE | 164 | 10.3 | El-Sibai 2009 | |
Yemen | 62 | 9.6 | El-Sibai 2009 |
Sephardi Jews have about 15% (Nebel 2001) -29% (Semino 2004) , of haplogroup J-M172, and Ashkenazi Jews have 15% (Shen 2004) -23% (Semino 2004) . It was reported in an early study which tested only four STR markers (Malaspina 2001) that a small sample of Italian Cohens belonged to Network 1.2, an early designation for the overall clade now known as J-L26, defined by the deletion at DYS413. However, a large number of all Jewish Cohens in the world belong to haplogroup J-M267 (see Cohen modal haplotype).
Haplogroup J-M172 has been shown to have a more northern distribution in the Middle East, although it exists in significant amounts in the southern middle-east regions, a lesser amount of it was found when compared to its brother haplogroup, J-M267, which has a high frequency southerly distribution. It was believed that the source population of J-M172 originated from the Levant/Syria (Syrid-J-M172), and that its occurrence among modern populations of Europe, Central Asia, and South Asia was a sign of the neolithic agriculturalists. However, as stated it is now more likely to have originated in regions farther to the north, with the first metallurgists of the Middle East.
South Asia
J2-M172 was found to be significantly higher among Dravidian castes at 19% than among Indo-European castes at 11%. J2-M172 and J-M410 is found 21% among Dravidian middle castes, followed by upper castes, 18.6%, and lower castes 14%.[21] Among caste groups, the highest frequency of J2-M172 was observed among Tamil Vellalar's of South India, at 38.7%.[22] J2 is present in Indian tribals too and has a frequency of 11% in Austro-Asiatic tribals. Among the Austro-Asiatic tribals, the predominant J2 occurs in the Lodha(35%) of West Bengal.[23] J2 is also present in the South Indian hill tribe Toda at 38.46% albeit with a sample size of only 26[24], in the Andh tribe of Telangana at 35.19%[25] and in the Kol tribe of Uttar Pradesh at a frequency of 33.34%.[26] Haplogroup J-P209 was found to be more common in India's Shia Muslims, of which 28.7% belong to haplogroup J, with 13.7% in J-M410, 10.6% in J-M267 and 4.4% in J2b (Eaaswarkhanth 2009) .
In Pakistan, the highest frequencies of J2-M172 were observed among the Parsis at 38.89%, the Dravidian speaking Brahui's at 28.18% and the Makrani Balochs at 24%.[27] It also occurs at 18.18% in Makrani Siddis and at 3% in Karnataka Siddis.[27][28]
J2-M172 is found at an overall frequency of 16.1% in the people of Sri Lanka.[29] In Maldives, 22% of Maldivian population were found to be haplogroup J2 positive.[30] Subclades of M172 such as M67 and M92 were not found in either Indian or Pakistani samples which also might hint at a partial common origin.[21]
Subclade distribution
Haplogroup J-M172 is subdivided into two complementary sub-haplogroups: J-M410, defined by the M410 genetic marker, and J-M12, defined by the M12 genetic marker.
J-M172
J-M172 is typical of populations of the Near East, Southeast Europe, Southwest Asia and the Caucasus, with a moderate distribution through much of Central Asia, South Asia, and North Africa.[citation needed]
J-M410
J-M410 is found in Georgia, North Ossetia.[citation needed]
J-M47
J-M47 is found with low frequency in Georgia, (Battaglia 2008) southern Iran (Regueiro 2006) , Qatar (Cadenas 2008) Saudi Arabia (AbuAmero 2009) , Syria (Di Giacomo 2004) , Tunisia (Arredi 2004) , Turkey (Di Giacomo 2004 and Cinnioglu 2004 ), the UAE, (Cadenas 2008) , and Central Asia/Siberia (Underhill 2000) .
J-M67
J-M67 (Called J2f in older papers) has its highest frequencies associated with Nakh peoples. Found at very high (majority) frequencies among Ingush in Malgobek (87.4%), Chechens in Dagestan (58%), Chechens in Chechnya (56.8%) and Chechens in Malgobek, Ingushetia (50.9%) (Balanovsky 2011) . In the Caucasus, it is found at significant frequencies among Georgians (13.3%) (Semino 2004) , Iron Ossetes (11.3%), South Caucasian Balkars (6.3%) (Semino 2004) , Digor Ossetes (5.5%), Abkhaz (6.9%), and Cherkess (5.6%) (Balanovsky 2011) . It is also found at notable frequencies in the Mediterranean and Middle East, including Cretans (10.2%), North-central Italians (9.6%), Southern Italians (4.2%; only 0.8% among N. Italians), Anatolian Turks (2.7-5.4%), Greeks (4-4.3%), Albanians (3.6%), Ashkenazi Jews (4.9%), Sephardis (2.4%), Catalans (3.9%), Andalusians (3.2%), Calabrians (3.3%), Albanian Calabrians (8.9%) (see Di Giacomo 2004 and Semino 2004 ).
J-M319
J-M319 is found with low to moderate frequency in Cretan Greeks (Martinez 2007 and King 2008 ), Iraqi Jews (Shen 2004) , and Moroccan Jews (Shen 2004) .
J-M158
J-M158 (location under L24 uncertain) J-M158 is found with low frequency in Turkey (Cinnioglu 2004) , South Asia (Sengupta 2006 and Underhill 2000 ), Indochina (Underhill 2000) , and Iberian Peninsula.
Phylogenetics
In Y-chromosome phylogenetics, subclades are the branches of haplogroups. These subclades are also defined by single nucleotide polymorphisms (SNPs) or unique event polymorphisms (UEPs).
Phylogenetic history
Prior to 2002, there were in academic literature at least seven naming systems for the Y-Chromosome Phylogenetic tree. This led to considerable confusion. In 2002, the major research groups came together and formed the Y-Chromosome Consortium (YCC). They published a joint paper that created a single new tree that all agreed to use. Later, a group of citizen scientists with an interest in population genetics and genetic genealogy formed a working group to create an amateur tree aiming at being above all timely. The table below brings together all of these works at the point of the landmark 2002 YCC Tree. This allows a researcher reviewing older published literature to quickly move between nomenclatures.
YCC 2002/2008 (Shorthand) | (α) | (β) | (γ) | (δ) | (ε) | (ζ) | (η) | YCC 2002 (Longhand) | YCC 2005 (Longhand) | YCC 2008 (Longhand) | YCC 2010r (Longhand) | ISOGG 2006 | ISOGG 2007 | ISOGG 2008 | ISOGG 2009 | ISOGG 2010 | ISOGG 2011 | ISOGG 2012 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
J-12f2a | 9 | VI | Med | 23 | Eu10 | H4 | B | J* | J | J | J | - | - | - | - | - | - | J |
J-M62 | 9 | VI | Med | 23 | Eu10 | H4 | B | J1 | J1a | J1a | J1a | - | - | - | - | - | - | Private |
J-M172 | 9 | VI | Med | 24 | Eu9 | H4 | B | J2* | J2 | J2 | J2 | - | - | - | - | - | - | J2 |
J-M47 | 9 | VI | Med | 24 | Eu9 | H4 | B | J2a | J2a | J2a1 | J2a4a | - | - | - | - | - | - | J2a1a |
J-M68 | 9 | VI | Med | 24 | Eu9 | H4 | B | J2b | J2b | J2a3 | J2a4c | - | - | - | - | - | - | J2a1c |
J-M137 | 9 | VI | Med | 24 | Eu9 | H4 | B | J2c | J2c | J2a4 | J2a4h2a1 | - | - | - | - | - | - | J2a1h2a1a |
J-M158 | 9 | VI | Med | 24 | Eu9 | H4 | B | J2d | J2d | J2a5 | J2a4h1 | - | - | - | - | - | - | J2a1h1 |
J-M12 | 9 | VI | Med | 24 | Eu9 | H4 | B | J2e* | J2e | J2b | J2b | - | - | - | - | - | - | J2b |
J-M102 | 9 | VI | Med | 24 | Eu9 | H4 | B | J2e1* | J2e1 | J2b | J2b | - | - | - | - | - | - | J2b |
J-M99 | 9 | VI | Med | 24 | Eu9 | H4 | B | J2e1a | J2e1a | J2b2a | J2b2a | - | - | - | - | - | - | Private |
J-M67 | 9 | VI | Med | 24 | Eu9 | H4 | B | J2f* | J2f | J2a2 | J2a4b | - | - | - | - | - | - | J2a1b |
J-M92 | 9 | VI | Med | 24 | Eu9 | H4 | B | J2f1 | J2f1 | J2a2a | J2a4b1 | - | - | - | - | - | - | J2a1b1 |
J-M163 | 9 | VI | Med | 24 | Eu9 | H4 | B | J2f2 | J2f2 | J2a2b | J2a4b2 | - | - | - | - | - | - | Private |
Research publications
The following research teams per their publications were represented in the creation of the YCC Tree.
Phylogenetic trees
There are several confirmed and proposed phylogenetic trees available for haplogroup J-M172. The scientifically accepted one is the Y-Chromosome Consortium (YCC) one published in Karafet 2008 and subsequently updated. A draft tree that shows emerging science is provided by Thomas Krahn at the Genomic Research Center in Houston, Texas. The International Society of Genetic Genealogy (ISOGG) also provides an amateur tree.[Phylogenetics 3][Phylogenetics 4]
The Genomic Research Center draft tree
This is Thomas Krahn at the Genomic Research Center's draft tree Proposed Tree for haplogroup J-M172 (Krahn & FTDNA 2013) . For brevity, only the first three levels of subclades are shown.
- M172, L228
- M410, L152, L212, L505, L532, L559
- M289
- L26, L27, L927
- M47, M322
- M67, L558
- M319
- M339
- M419
- P81
- L24, L207.1
- L88.2, L198
- L250.2, L251.2
- L267
- P329.2
- L581
- M12, M102, M221, M314, L282
- M205
- M241
- M99
- M280
- M321
- P84
- L283
- M410, L152, L212, L505, L532, L559
The Y-Chromosome Consortium tree
This is the official scientific tree produced by the Y-Chromosome Consortium (YCC). The last major update was in 2008 (Karafet 2008) . Subsequent updates have been quarterly and biannual. The current version is a revision of the 2010 update.[31]
This section needs expansion. You can help by adding to it. (January 2013) |
The ISOGG tree
Below are the subclades of Haplogroup J-M172 with their defining mutation, according to the ISOGG tree (as of August 2017). Note that the descent-based identifiers may be subject to change, as new SNPs are discovered that augment and further refine the tree. For brevity, only the first three levels of subclades are shown.
- J2 M172/Page28/PF4908, L228/PF4895/S321
- J2a M410, L152, L212/PF4988, L559/PF4986
- J2a1 DYS413≤18, L26/Page55/PF5110/S57, F4326/L27/PF5111/S396
- J2a1a M47, M322
- J2a1b M67/PF5137/S51
- J2a1c M68
- J2a1d M319
- J2a1e M339
- J2a1f M419
- J2a1g P81/PF4275
- J2a1h L24/S286, L207.1
- J2a1i L88.2, L198
- J2a2 L581/PF5026/S398
- J2a2a P279/PF5065
- J2a1 DYS413≤18, L26/Page55/PF5110/S57, F4326/L27/PF5111/S396
- J2b L282, M12, M102, M221, M314/PF4939
- J2b1 M205
- J2b2 M241
- J2b2a L283
- J2a M410, L152, L212/PF4988, L559/PF4986
See also
Genetics
Y-DNA J Subclades
Y-DNA Backbone Tree
References
- ^ Semino O, Magri C, Benuzzi G, et al. (May 2004). "Origin, diffusion, and differentiation of Y-chromosome haplogroups E and J: inferences on the neolithization of Europe and later migratory events in the Mediterranean area". Am. J. Hum. Genet. 74: 1023–34. doi:10.1086/386295. PMC 1181965. PMID 15069642.
- ^ a b "TMRCAs of major haplogroups in Europe estimated using two methods. : Large-scale recent expansion of European patrilineages shown by population resequencing : Nature Communications : Nature Publishing Group". www.nature.com. Retrieved 2015-05-20.
- ^ The extent of differentiation of Hg J, observed both with the biallelic and microsatellite markers, points to the Middle East as its likely homeland. In this area, J-M172 and J-M267 are equally represented and show the highest degree of internal variation, indicating that it is most likely that these subclades also arose in the Middle East. (Di Giacomo 2004)
- ^ Shou et al (2010), Y-chromosome distributions among populations in Northwest China identify significant contribution from Central Asian pastoralists and lesser influence of western Eurasians, Journal of Human Genetics 55, 314-322 (May 2010) | doi:10.1038/jhg.2010.30, Link to the table of haplogroup distribution and Y-chromosome diversity in 14 northwestern populations, Quote: "Uygurs, J2-M172 17/50=34%"
- ^ Haber M, Platt DE, Ashrafian Bonab M, Youhanna SC, Soria-Hernanz DF, Martínez-Cruz B, Douaihy B, Ghassibe-Sabbagh M, Rafatpanah H, Ghanbari M, Whale J, Balanovsky O, Wells RS, Comas D, Tyler-Smith C, Zalloua PA (2011). Kayser M (ed.). "Afghanistan's Ethnic Groups Share a Y-Chromosomal Heritage Structured by Historical Events". PLOS ONE. 7 (3): e34288. Bibcode:2012PLoSO...734288H. doi:10.1371/journal.pone.0034288. PMC 3314501. PMID 22470552.
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: CS1 maint: unflagged free DOI (link) - ^ C. Capelli, N. Redhead, V. Romano et al., "Population Structure in the Mediterranean Basin: A Y Chromosome Perspective," Annals of Human Genetics (2005)
- ^ Y haplogroup J in Iran by Alfred A. Aburto Jr.
- ^ a b c Трофимова Наталья Вадимовна, ИЗМЕНЧИВОСТЬ МИТОХОНДРИАЛЬНОЙ ДНК И Y-ХРОМОСОМЫВ ПОПУЛЯЦИЯХ ВОЛГО-УРАЛЬСКОГО РЕГИОНА, 03.02.07
- ^ A genetic study published led by Firasat (2007) on Kalash individuals found high and diverse frequencies.
- ^ a b Zalloua & Wells: National Geographic Magazine, October 2004. [1] and [2].
- ^ a b "N. Al-Zahery et al. "Y-chromosome and mtDNA polymorphisms in Iraq, a crossroad of the early human dispersal and of post-Neolithic migrations" (2003)" (PDF). Family Tree DNA. Retrieved 1 September 2013.
- ^ a b Semino O, Magri C, Benuzzi G, Lin AA, Al-Zahery N, Battaglia V, Maccioni L, Triantaphyllidis C, Shen P, Oefner PJ, Zhivotovsky LA, King R, Torroni A, Cavalli-Sforza LL, Underhill PA, Santachiara-Benerecetti AS (May 2004). "Origin, Diffusion, and Differentiation of Y-Chromosome Haplogroups E and J: Inferences on the Neolithization of Europe and Later Migratory Events in the Mediterranean Area". AJHG. 74 (5): 1023–34. doi:10.1086/386295. PMC 1181965. PMID 15069642.
- ^ "Haplogroup J2 Origins". www.eupedia.com. Retrieved 2016-01-20.
- ^ Nebel A, Filon D, Brinkmann B, Majumder PP, Faerman M, Oppenheim A (Nov 2001). "The Y Chromosome Pool of Jews as Part of the Genetic Landscape of the Middle East". AJHG. 69 (5): 1095–1112. doi:10.1086/324070. PMC 1274378. PMID 11573163. See especially Figure Six. Semino 2000 is a source which also states that Eu 9 descends from Eu 10 (Eu 10 is a different subclade of Haplogroup J (mtDNA)).
- ^ Di Giacomo F, Luca F, Popa LO, Akar N, Anagnou N, Banyko J, Brdicka R, Barbujani G, Papola F, Ciavarella G, Cucci F, Di Stasi L, Gavrila L, Kerimova MG, Kovatchev D, Kozlov AI, Loutradis A, Mandarino V, Mammi' C, Michalodimitrakis EN, Paoli G, Pappa KI, Pedicini G, Terrenato L, Tofanelli S, Malaspina P, Novelletto A (2004). "Y chromosomal haplogroup J as a signature of the post-neolithic colonization of Europe". Human Genetics. 115 (5): 357–71. doi:10.1007/s00439-004-1168-9. PMID 15322918.
- ^ Allentoft, et al. (2015). "Population genomics of Bronze Age Eurasia". Nature. 522: 167–172. doi:10.1038/nature14507.
- ^ C. Rоttensteiner, J2a2-PH3085, SK1403: Ancient Altai, modern Uygur and Turkish, J2-M172 Haplogroup Research.
- ^ F. Immanuel, Codes for Gedmatch Results, Ancient DNA page, F999962 for RISE504, Kytmanovo sample, and F999965 for RISE602, Sary-bel sample.
- ^ Al-Zahery et al, 2011, Additional file 3. Absolute frequencies of Y-chromosome haplogroups and sub-haplogroups in the 48 populations included in the PCA. Note: Only 37 of 154 samples (24%) are J2 in Iraq according to the list of Al-Zahery 2011. 43.6% is the frequency of J2 among all J haplogroup Iraqis, not all haplogroups.
- ^ Abu-Amero (2009), Saudi Arabian Y-Chromosome diversity and its relationship with nearby regions, Quote: The most abundant haplogroups in Saudi Arabia, J1-M267 (42%), J2-M172 (14%), E1-M2 (8%), R1-M17 (5%) and K2-M184 (5%) are also well represented in other Arabian populations (Table (Table1).1).
- ^ a b Sengupta S, Zhivotovsky LA, King R, et al. (February 2006). "Polarity and temporality of high-resolution y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of Central Asian pastoralists". Am. J. Hum. Genet. 78: 202–21. doi:10.1086/499411. PMC 1380230. PMID 16400607.
- ^ Sengupta S, Zhivotovsky LA, King R, et al. (February 2006). "Polarity and Temporality of High-Resolution Y-Chromosome Distributions in India Identify Both Indigenous and Exogenous Expansions and Reveal Minor Genetic Influence of Central Asian Pastoralists". Am. J. Hum. Genet. 78: 202–21. doi:10.1086/499411. PMC 1380230. PMID 16400607.
- ^ Sengupta S, Zhivotovsky LA, King R, et al. (February 2006). "Polarity and temporality of high-resolution y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of Central Asian pastoralists". Am. J. Hum. Genet. 78: 202–21. doi:10.1086/499411. PMC 1380230. PMID 16400607.
- ^ Arunkumar G, Soria-Hernanz DF, Kavitha VJ, Arun VS, Syama A, Ashokan KS, Gandhirajan KT, Vijayakumar K, Narayanan M, Jayalakshmi M, Ziegle JS, Royyuru AK, Parida L, Wells RS, Renfrew C, Schurr TG, Smith CT, Platt DE, Pitchappan R (2012). "Population Differentiation of Southern Indian Male Lineages Correlates with Agricultural Expansions Predating the Caste System". PLoS ONE. 7: e50269. doi:10.1371/journal.pone.0050269. PMC 3508930. PMID 23209694.
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- ^ a b Qamar R, Ayub Q, Mohyuddin A, et al. (May 2002). "Y-Chromosomal DNA Variation in Pakistan". Am. J. Hum. Genet. 70: 1107–24. doi:10.1086/339929. PMC 447589. PMID 11898125.
- ^ Shah AM, Tamang R, Moorjani P, Rani DS, Govindaraj P, Kulkarni G, Bhattacharya T, Mustak MS, Bhaskar LV, Reddy AG, Gadhvi D, Gai PB, Chaubey G, Patterson N, Reich D, Tyler-Smith C, Singh L, Thangaraj K (2011). "Indian Siddis: African Descendants with Indian Admixture". Am. J. Hum. Genet. 89: 154–61. doi:10.1016/j.ajhg.2011.05.030. PMC 3135801. PMID 21741027.
- ^ "The Genetics of Language and Farming Spread in India" (PDF).
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(help) - ^ Ancestry of Maldives People in Light of Population Genetics: Maldivian Ancestry in light of Genetics
- ^ "Y-DNA Haplotree". Family Tree DNA uses the Y-Chromosome Consortium tree and posts it on their website.
Bibliography
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- ^ Nebel A, Filon D, Brinkmann B, Majumder PP, Faerman M, Oppenheim A (2001). "The Y chromosome pool of Jews as part of the genetic landscape of the Middle East". Am. J. Hum. Genet. 69 (5): 1095–112. doi:10.1086/324070. PMC 1274378. PMID 11573163.
- ^ Malaspina P, Tsopanomichalou M, Duman T, Stefan M, Silvestri A, Rinaldi B, Garcia O, Giparaki M, Plata E, Kozlov AI, Barbujani G, Vernesi C, Papola F, Ciavarella G, Kovatchev D, Kerimova MG, Anagnou N, Gavrila L, Veneziano L, Akar N, Loutradis A, Michalodimitrakis EN, Terrenato L, Novelletto A (2001). "A multistep process for the dispersal of a Y chromosomal lineage in the Mediterranean area". Ann. Hum. Genet. 65 (Pt 4): 339–49. doi:10.1046/j.1469-1809.2001.6540339.x. PMID 11592923.
Further reading
- Abu-Amero KK, Hellani A, González AM, Larruga JM, Cabrera VM, Underhill PA (2009). "Saudi Arabian Y-Chromosome diversity and its relationship with nearby regions". BMC Genetics. 10: 59. doi:10.1186/1471-2156-10-59. PMC 2759955. PMID 19772609.
{{cite journal}}
: CS1 maint: unflagged free DOI (link) - Al-Zahery N, Semino O, Benuzzi G, Magri C, Passarino G, Torroni A, Santachiara-Benerecetti AS (2003). "Y-chromosome and mtDNA polymorphisms in Iraq, a crossroad of the early human dispersal and of post-Neolithic migrations". Molecular Phylogenetics and Evolution. 28 (3): 458–72. doi:10.1016/S1055-7903(03)00039-3. PMID 12927131.
- Al-Zahery N, Pala M, Battaglia V, Grugni V, Hamod MA, Hooshiar Kashani B, Olivieri A, Torroni A, Santachiara-Benerecetti AS, Semino O (2011). "In search of the genetic footprints of Sumerians: A survey of Y-chromosome and mtDNA variation in the Marsh Arabs of Iraq". BMC Evolutionary Biology. 11: 288. doi:10.1186/1471-2148-11-288. PMC 3215667. PMID 21970613.
{{cite journal}}
: CS1 maint: unflagged free DOI (link) - Arredi B, Poloni ES, Paracchini S, Zerjal T, Fathallah DM, Makrelouf M, Pascali VL, Novelletto A, Tyler-Smith C (2004). "A Predominantly Neolithic Origin for Y-Chromosomal DNA Variation in North Africa". The American Journal of Human Genetics. 75 (2): 338–45. doi:10.1086/423147. PMC 1216069. PMID 15202071.
- Balanovsky O, Dibirova K, Dybo A, Mudrak O, Frolova S, Pocheshkhova E, Haber M, Platt D, Schurr T, Haak W, Kuznetsova M, Radzhabov M, Balaganskaya O, Romanov A, Zakharova T, Soria Hernanz DF, Zalloua P, Koshel S, Ruhlen M, Renfrew C, Wells RS, Tyler-Smith C, Balanovska E (2011). "Parallel Evolution of Genes and Languages in the Caucasus Region". Molecular Biology and Evolution. 28 (10): 2905–20. doi:10.1093/molbev/msr126. PMC 3355373. PMID 21571925.
- Battaglia V, Fornarino S, Al-Zahery N, Olivieri A, Pala M, Myres NM, King RJ, Rootsi S, Marjanovic D, Primorac D, Hadziselimovic R, Vidovic S, Drobnic K, Durmishi N, Torroni A, Santachiara-Benerecetti AS, Underhill PA, Semino O (2008). "Y-chromosomal evidence of the cultural diffusion of agriculture in southeast Europe". European Journal of Human Genetics. 17 (6): 820–30. doi:10.1038/ejhg.2008.249. PMC 2947100. PMID 19107149.
- Cadenas AM, Zhivotovsky LA, Cavalli-Sforza LL, Underhill PA, Herrera RJ (2007). "Y-chromosome diversity characterizes the Gulf of Oman". European Journal of Human Genetics. 16 (3): 374–86. doi:10.1038/sj.ejhg.5201934. PMID 17928816.
- Capelli C, Redhead N, Romano V, Calì F, Lefranc G, Delague V, Megarbane A, Felice AE, Pascali VL, Neophytou PI, Poulli Z, Novelletto A, Malaspina P, Terrenato L, Berebbi A, Fellous M, Thomas MG, Goldstein DB (2006). "Population Structure in the Mediterranean Basin: A Y Chromosome Perspective". Annals of Human Genetics. 70 (2): 207–25. doi:10.1111/j.1529-8817.2005.00224.x. PMID 16626331.
- Capelli C, Brisighelli F, Scarnicci F, Arredi B, Caglia' A, Vetrugno G, Tofanelli S, Onofri V, Tagliabracci A, Paoli G, Pascali VL (2007). "Y chromosome genetic variation in the Italian peninsula is clinal and supports an admixture model for the Mesolithic–Neolithic encounter". Molecular Phylogenetics and Evolution. 44 (1): 228–39. doi:10.1016/j.ympev.2006.11.030. PMID 17275346.
- Cinnioğlu C, King R, Kivisild T, Kalfoğlu E, Atasoy S, Cavalleri GL, Lillie AS, Roseman CC, Lin AA, Prince K, Oefner PJ, Shen P, Semino O, Cavalli-Sforza LL, Underhill PA (2004). "Excavating Y-chromosome haplotype strata in Anatolia". Human Genetics. 114 (2): 127–48. doi:10.1007/s00439-003-1031-4. PMID 14586639.
- Di Giacomo F, Luca F, Anagnou N, Ciavarella G, Corbo RM, Cresta M, Cucci F, Di Stasi L, Agostiano V, Giparaki M, Loutradis A, Mammi' C, Michalodimitrakis EN, Papola F, Pedicini G, Plata E, Terrenato L, Tofanelli S, Malaspina P, Novelletto A (2003). "Clinal patterns of human Y chromosomal diversity in continental Italy and Greece are dominated by drift and founder effects". Molecular Phylogenetics and Evolution. 28 (3): 387–95. doi:10.1016/S1055-7903(03)00016-2. PMID 12927125.
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- Di Giacomo F, Luca F, Popa LO, Akar N, Anagnou N, Banyko J, Brdicka R, Barbujani G, Papola F, Ciavarella G, Cucci F, Di Stasi L, Gavrila L, Kerimova MG, Kovatchev D, Kozlov AI, Loutradis A, Mandarino V, Mammi' C, Michalodimitrakis EN, Paoli G, Pappa KI, Pedicini G, Terrenato L, Tofanelli S, Malaspina P, Novelletto A (2004). "Y chromosomal haplogroup J as a signature of the post-neolithic colonization of Europe". Human Genetics. 115 (5): 357–71. doi:10.1007/s00439-004-1168-9. PMID 15322918.
- Grugni V, Battaglia V, Hooshiar Kashani B, Parolo S, Al-Zahery N, Achilli A, Olivieri A, Gandini F, Houshmand M, Sanati MH, Torroni A, Semino O (2012). Kivisild T (ed.). "Ancient Migratory Events in the Middle East: New Clues from the Y-Chromosome Variation of Modern Iranians". PLoS ONE. 7 (7): e41252. Bibcode:2012PLoSO...741252G. doi:10.1371/journal.pone.0041252. PMC 3399854. PMID 22815981.
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- Martinez L, Underhill PA, Zhivotovsky LA, Gayden T, Moschonas NK, Chow CE, Conti S, Mamolini E, Cavalli-Sforza LL, Herrera RJ (2007). "Paleolithic Y-haplogroup heritage predominates in a Cretan highland plateau". European Journal of Human Genetics. 15 (4): 485–93. doi:10.1038/sj.ejhg.5201769. PMID 17264870.
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- Semino O, Magri C, Benuzzi G, Lin AA, Al-Zahery N, Battaglia V, Maccioni L, Triantaphyllidis C, Shen P, Oefner PJ, Zhivotovsky LA, King R, Torroni A, Cavalli-Sforza LL, Underhill PA, Santachiara-Benerecetti AS (2004). "Origin, Diffusion, and Differentiation of Y-Chromosome Haplogroups E and J: Inferences on the Neolithization of Europe and Later Migratory Events in the Mediterranean Area". The American Journal of Human Genetics. 74 (5): 1023–34. doi:10.1086/386295. PMC 1181965. PMID 15069642.
- Sengupta S, Zhivotovsky LA, King R, Mehdi SQ, Edmonds CA, Chow CE, Lin AA, Mitra M, Sil SK, Ramesh A, Usha Rani MV, Thakur CM, Cavalli-Sforza LL, Majumder PP, Underhill PA (2006). "Polarity and Temporality of High-Resolution Y-Chromosome Distributions in India Identify Both Indigenous and Exogenous Expansions and Reveal Minor Genetic Influence of Central Asian Pastoralists". The American Journal of Human Genetics. 78 (2): 202–21. doi:10.1086/499411. PMC 1380230. PMID 16400607.
- Shen P, Lavi T, Kivisild T, Chou V, Sengun D, Gefel D, Shpirer I, Woolf E, Hillel J, Feldman MW, Oefner PJ (2004). "Reconstruction of patrilineages and matrilineages of Samaritans and other Israeli populations from Y-Chromosome and mitochondrial DNA sequence Variation". Human Mutation. 24 (3): 248–60. doi:10.1002/humu.20077. PMID 15300852.
- Tofanelli S, Ferri G, Bulayeva K, Caciagli L, Onofri V, Taglioli L, Bulayev O, Boschi I, Alù M, Berti A, Rapone C, Beduschi G, Luiselli D, Cadenas AM, Awadelkarim KD, Mariani-Costantini R, Elwali NE, Verginelli F, Pilli E, Herrera RJ, Gusmão L, Paoli G, Capelli C (2009). "J1-M267 Y lineage marks climate-driven pre-historical human displacements". European Journal of Human Genetics. 17 (11): 1520–4. doi:10.1038/ejhg.2009.58. PMC 2986692. PMID 19367321.
- Underhill PA, Shen P, Lin AA, Jin L, Passarino G, Yang WH, Kauffman E, Bonné-Tamir B, Bertranpetit J, Francalacci P, Ibrahim M, Jenkins T, Kidd JR, Mehdi SQ, Seielstad MT, Wells RS, Piazza A, Davis RW, Feldman MW, Cavalli-Sforza LL, Oefner PJ (2000). "Y chromosome sequence variation and the history of human populations". Nature Genetics. 26 (3): 358–61. doi:10.1038/81685. PMID 11062480.
- Wells RS, Yuldasheva N, Ruzibakiev R, Underhill PA, Evseeva I, Blue-Smith J, Jin L, Su B, Pitchappan R, Shanmugalakshmi S, Balakrishnan K, Read M, Pearson NM, Zerjal T, Webster MT, Zholoshvili I, Jamarjashvili E, Gambarov S, Nikbin B, Dostiev A, Aknazarov O, Zalloua P, Tsoy I, Kitaev M, Mirrakhimov M, Chariev A, Bodmer WF (2001). "The Eurasian Heartland: A continental perspective on Y-chromosome diversity". Proceedings of the National Academy of Sciences. 98 (18): 10244–9. Bibcode:2001PNAS...9810244W. doi:10.1073/pnas.171305098. PMC 56946. PMID 11526236.
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{{cite journal}}
: CS1 maint: unflagged free DOI (link) - Shou WH, Qiao EF, Wei CY, Dong YL, Tan SJ, Shi H, Tang WR, Xiao CJ (2010). "Y-chromosome distributions among populations in Northwest China identify significant contribution from Central Asian pastoralists and lesser influence of western Eurasians". Journal of Human Genetics. 55 (5): 314–22. doi:10.1038/jhg.2010.30. PMID 20414255.
External links
- Migration of Indians Across Continents spanning generations: A Case History of the Saluja Family.
- In Lebanon DNA may yet heal rifts
Phylogenetic notes
- ^ This table shows the historic names for J-M172 in published peer reviewed literature. Note that in Semino 2000 Eu09 is a subclade of Eu10 and in Karafet 2001 24 is a subclade of 23.
YCC 2002/2008 (Shorthand) J-M172 Jobling and Tyler-Smith 2000 9 Underhill 2000 VI Hammer 2001 Med Karafet 2001 24 Semino 2000 Eu9 Su 1999 H4 Capelli 2001 B YCC 2002 (Longhand) J2* YCC 2005 (Longhand) J2 YCC 2008 (Longhand) J2 YCC 2010r (Longhand) J2 - ^ This table shows the historic names for J-P209 (AKA J-12f2.1 or J-M304) in published peer reviewed literature. Note that in Semino 2000 Eu09 is a subclade of Eu10 and in Karafet 2001 24 is a subclade of 23.
YCC 2002/2008 (Shorthand) J-P209
(AKA J-12f2.1 or J-M304)Jobling and Tyler-Smith 2000 9 Underhill 2000 VI Hammer 2001 Med Karafet 2001 23 Semino 2000 Eu10 Su 1999 H4 Capelli 2001 B YCC 2002 (Longhand) J* YCC 2005 (Longhand) J YCC 2008 (Longhand) J YCC 2010r (Longhand) J - ^ http://www.isogg.org/tree/ISOGG_HapgrpJ.html
- ^ http://thegeneticatlas.com/J2_Y-DNA.htm
- ^ Renfrew AC (1998). Archaeology and language: the puzzle of Indo-European origins (Pimlico ed.). London: Pimlico. ISBN 0-7126-6612-5.