Patricia Babbitt: Difference between revisions
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'''Patricia Clement Babbitt''' is a [[Professor]] and [[Principal Investigator]] (PI) in the School of [[Pharmacy]] at the [[University of California, San Francisco]] (UCSF).<ref name=googlescholar>{{Google scholar id}}</ref><ref name=ucsfprofile>{{cite web|url=http://profiles.ucsf.edu/patricia.babbitt|title=Patricia Babbitt - UCSF Profiles|website=profiles.ucsf.edu}}</ref><ref name=lab>{{cite web|url=http://babbittlab.ucsf.edu/|title=Babbitt Lab Website|website=babbittlab.ucsf.edu}}</ref><ref name="GerltBabbitt2001">{{cite journal|last1=Gerlt|first1=John A.|last2=Babbitt|first2=Patricia C.|title=Divergent Evolution of Enzymatic Function: Mechanistically Diverse Superfamilies and Functionally Distinct Suprafamilies|journal=[[Annual Review of Biochemistry]]|volume=70|issue=1|year=2001|pages=209–246|issn=0066-4154|doi=10.1146/annurev.biochem.70.1.209|pmid= 11395407}} {{closed access}}</ref><ref name="RadivojacClark2013">{{cite journal|last1=Radivojac|first1=Predrag|last2=Clark|first2=Wyatt T|last3=Oron|first3=Tal Ronnen|last4=Schnoes|first4=Alexandra M|last5=Wittkop|first5=Tobias|last6=Sokolov|first6=Artem|last7=Graim|first7=Kiley|last8=Funk|first8=Christopher|last9=Verspoor|first9=Karin|last10=Ben-Hur|first10=Asa|last11=Pandey|first11=Gaurav|last12=Yunes|first12=Jeffrey M|last13=Talwalkar|first13=Ameet S|last14=Repo|first14=Susanna|last15=Souza|first15=Michael L|last16=Piovesan|first16=Damiano|last17=Casadio|first17=Rita|last18=Wang|first18=Zheng|last19=Cheng|first19=Jianlin|last20=Fang|first20=Hai|last21=Gough|first21=Julian|last22=Koskinen|first22=Patrik|last23=Törönen|first23=Petri|last24=Nokso-Koivisto|first24=Jussi|last25=Holm|first25=Liisa|last26=Cozzetto|first26=Domenico|last27=Buchan|first27=Daniel W A|last28=Bryson|first28=Kevin|last29=Jones|first29=David T|last30=Limaye|first30=Bhakti|last31=Inamdar|first31=Harshal|last32=Datta|first32=Avik|last33=Manjari|first33=Sunitha K|last34=Joshi|first34=Rajendra|last35=Chitale|first35=Meghana|last36=Kihara|first36=Daisuke|last37=Lisewski|first37=Andreas M|last38=Erdin|first38=Serkan|last39=Venner|first39=Eric|last40=Lichtarge|first40=Olivier|last41=Rentzsch|first41=Robert|last42=Yang|first42=Haixuan|last43=Romero|first43=Alfonso E|last44=Bhat|first44=Prajwal|last45=Paccanaro|first45=Alberto|last46=Hamp|first46=Tobias|last47=Kaßner|first47=Rebecca|last48=Seemayer|first48=Stefan|last49=Vicedo|first49=Esmeralda|last50=Schaefer|first50=Christian|last51=Achten|first51=Dominik|last52=Auer|first52=Florian|last53=Boehm|first53=Ariane|last54=Braun|first54=Tatjana|last55=Hecht|first55=Maximilian|last56=Heron|first56=Mark|last57=Hönigschmid|first57=Peter|last58=Hopf|first58=Thomas A|last59=Kaufmann|first59=Stefanie|last60=Kiening|first60=Michael|last61=Krompass|first61=Denis|last62=Landerer|first62=Cedric|last63=Mahlich|first63=Yannick|last64=Roos|first64=Manfred|last65=Björne|first65=Jari|last66=Salakoski|first66=Tapio|last67=Wong|first67=Andrew|last68=Shatkay|first68=Hagit|last69=Gatzmann|first69=Fanny|last70=Sommer|first70=Ingolf|last71=Wass|first71=Mark N|last72=Sternberg|first72=Michael J E|last73=Škunca|first73=Nives|last74=Supek|first74=Fran|last75=Bošnjak|first75=Matko|last76=Panov|first76=Panče|last77=Džeroski|first77=Sašo|last78=Šmuc|first78=Tomislav|last79=Kourmpetis|first79=Yiannis A I|last80=van Dijk|first80=Aalt D J|last81=Braak|first81=Cajo J F ter|last82=Zhou|first82=Yuanpeng|last83=Gong|first83=Qingtian|last84=Dong|first84=Xinran|last85=Tian|first85=Weidong|last86=Falda|first86=Marco|last87=Fontana|first87=Paolo|last88=Lavezzo|first88=Enrico|last89=Di Camillo|first89=Barbara|last90=Toppo|first90=Stefano|last91=Lan|first91=Liang|last92=Djuric|first92=Nemanja|last93=Guo|first93=Yuhong|last94=Vucetic|first94=Slobodan|last95=Bairoch|first95=Amos|last96=Linial|first96=Michal|last97=Babbitt|first97=Patricia C|last98=Brenner|first98=Steven E|last99=Orengo|first99=Christine|last100=Rost|first100=Burkhard|last101=Mooney|first101=Sean D|last102=Friedberg|first102=Iddo|display-authors=13|title=A large-scale evaluation of computational protein function prediction|journal=[[Nature Methods]]|volume=10|issue=3|year=2013|pages=221–227|issn=1548-7091|doi=10.1038/nmeth.2340|pmid=23353650|pmc=3584181 }} {{open access}}</ref> She was elected a [[fellow]] of the [[International Society for Computational Biology]] (ISCB) in 2018 for outstanding contributions to the fields of computational biology and bioinformatics.<ref name=iscb>{{cite web|url=https://www.iscb.org/iscb-fellows|title=ISCB Fellows|website=iscb.org|author=Anon|year=2018|publisher=International Society for Computational Biology}}</ref> She is the Director of the UCSF Biological and Medical Informatics Graduate Program and serves on Advisory Boards for the UniProt Database, the Metacyc Metabolic Pathway Database, the HHMI Scientific Review Board, and as a Deputy Editor for PLoS Computational Biology.<ref name="lecture">{{cite web |title=CMNS Distinguished Woman Faculty Lecture |url=https://cmns.umd.edu/news-events/events/3444}}</ref> |
'''Patricia Clement Babbitt''' is a [[Professor]] and [[Principal Investigator]] (PI) in the School of [[Pharmacy]] at the [[University of California, San Francisco]] (UCSF).<ref name=googlescholar>{{Google scholar id}}</ref><ref name=ucsfprofile>{{cite web|url=http://profiles.ucsf.edu/patricia.babbitt|title=Patricia Babbitt - UCSF Profiles|website=profiles.ucsf.edu}}</ref><ref name=lab>{{cite web|url=http://babbittlab.ucsf.edu/|title=Babbitt Lab Website|website=babbittlab.ucsf.edu}}</ref><ref name="GerltBabbitt2001">{{cite journal|last1=Gerlt|first1=John A.|last2=Babbitt|first2=Patricia C.|title=Divergent Evolution of Enzymatic Function: Mechanistically Diverse Superfamilies and Functionally Distinct Suprafamilies|journal=[[Annual Review of Biochemistry]]|volume=70|issue=1|year=2001|pages=209–246|issn=0066-4154|doi=10.1146/annurev.biochem.70.1.209|pmid= 11395407}} {{closed access}}</ref><ref name="RadivojacClark2013">{{cite journal|last1=Radivojac|first1=Predrag|last2=Clark|first2=Wyatt T|last3=Oron|first3=Tal Ronnen|last4=Schnoes|first4=Alexandra M|last5=Wittkop|first5=Tobias|last6=Sokolov|first6=Artem|last7=Graim|first7=Kiley|last8=Funk|first8=Christopher|last9=Verspoor|first9=Karin|last10=Ben-Hur|first10=Asa|last11=Pandey|first11=Gaurav|last12=Yunes|first12=Jeffrey M|last13=Talwalkar|first13=Ameet S|last14=Repo|first14=Susanna|last15=Souza|first15=Michael L|last16=Piovesan|first16=Damiano|last17=Casadio|first17=Rita|last18=Wang|first18=Zheng|last19=Cheng|first19=Jianlin|last20=Fang|first20=Hai|last21=Gough|first21=Julian|last22=Koskinen|first22=Patrik|last23=Törönen|first23=Petri|last24=Nokso-Koivisto|first24=Jussi|last25=Holm|first25=Liisa|last26=Cozzetto|first26=Domenico|last27=Buchan|first27=Daniel W A|last28=Bryson|first28=Kevin|last29=Jones|first29=David T|last30=Limaye|first30=Bhakti|last31=Inamdar|first31=Harshal|last32=Datta|first32=Avik|last33=Manjari|first33=Sunitha K|last34=Joshi|first34=Rajendra|last35=Chitale|first35=Meghana|last36=Kihara|first36=Daisuke|last37=Lisewski|first37=Andreas M|last38=Erdin|first38=Serkan|last39=Venner|first39=Eric|last40=Lichtarge|first40=Olivier|last41=Rentzsch|first41=Robert|last42=Yang|first42=Haixuan|last43=Romero|first43=Alfonso E|last44=Bhat|first44=Prajwal|last45=Paccanaro|first45=Alberto|last46=Hamp|first46=Tobias|last47=Kaßner|first47=Rebecca|last48=Seemayer|first48=Stefan|last49=Vicedo|first49=Esmeralda|last50=Schaefer|first50=Christian|last51=Achten|first51=Dominik|last52=Auer|first52=Florian|last53=Boehm|first53=Ariane|last54=Braun|first54=Tatjana|last55=Hecht|first55=Maximilian|last56=Heron|first56=Mark|last57=Hönigschmid|first57=Peter|last58=Hopf|first58=Thomas A|last59=Kaufmann|first59=Stefanie|last60=Kiening|first60=Michael|last61=Krompass|first61=Denis|last62=Landerer|first62=Cedric|last63=Mahlich|first63=Yannick|last64=Roos|first64=Manfred|last65=Björne|first65=Jari|last66=Salakoski|first66=Tapio|last67=Wong|first67=Andrew|last68=Shatkay|first68=Hagit|last69=Gatzmann|first69=Fanny|last70=Sommer|first70=Ingolf|last71=Wass|first71=Mark N|last72=Sternberg|first72=Michael J E|last73=Škunca|first73=Nives|last74=Supek|first74=Fran|last75=Bošnjak|first75=Matko|last76=Panov|first76=Panče|last77=Džeroski|first77=Sašo|last78=Šmuc|first78=Tomislav|last79=Kourmpetis|first79=Yiannis A I|last80=van Dijk|first80=Aalt D J|last81=Braak|first81=Cajo J F ter|last82=Zhou|first82=Yuanpeng|last83=Gong|first83=Qingtian|last84=Dong|first84=Xinran|last85=Tian|first85=Weidong|last86=Falda|first86=Marco|last87=Fontana|first87=Paolo|last88=Lavezzo|first88=Enrico|last89=Di Camillo|first89=Barbara|last90=Toppo|first90=Stefano|last91=Lan|first91=Liang|last92=Djuric|first92=Nemanja|last93=Guo|first93=Yuhong|last94=Vucetic|first94=Slobodan|last95=Bairoch|first95=Amos|last96=Linial|first96=Michal|last97=Babbitt|first97=Patricia C|last98=Brenner|first98=Steven E|last99=Orengo|first99=Christine|last100=Rost|first100=Burkhard|last101=Mooney|first101=Sean D|last102=Friedberg|first102=Iddo|display-authors=13|title=A large-scale evaluation of computational protein function prediction|journal=[[Nature Methods]]|volume=10|issue=3|year=2013|pages=221–227|issn=1548-7091|doi=10.1038/nmeth.2340|pmid=23353650|pmc=3584181 }} {{open access}}</ref> She was elected a [[fellow]] of the [[International Society for Computational Biology]] (ISCB) in 2018 for outstanding contributions to the fields of computational biology and bioinformatics.<ref name=iscb>{{cite web|url=https://www.iscb.org/iscb-fellows|title=ISCB Fellows|website=iscb.org|author=Anon|year=2018|publisher=International Society for Computational Biology|access-date=2018-03-14|archive-url=https://web.archive.org/web/20170320114530/https://www.iscb.org/iscb-fellows|archive-date=2017-03-20|url-status=dead}}</ref> She is the Director of the UCSF Biological and Medical Informatics Graduate Program and serves on Advisory Boards for the UniProt Database, the Metacyc Metabolic Pathway Database, the HHMI Scientific Review Board, and as a Deputy Editor for PLoS Computational Biology.<ref name="lecture">{{cite web |title=CMNS Distinguished Woman Faculty Lecture |url=https://cmns.umd.edu/news-events/events/3444}}</ref> |
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==Education== |
==Education== |
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Revision as of 09:47, 1 May 2020
Patricia Babbitt | |
|---|---|
| Born | Patricia Clement Babbitt |
| Education | University of California, San Francisco (PhD) |
| Awards | ISCB Fellow (2018)[1] |
| Scientific career | |
| Fields | Bioinformatics[2] Computational biology[2] |
| Institutions | University of California, San Francisco |
| Thesis | Sequence determination, expression, and site-directed mutagenesis of creatine kinase (1988) |
| Doctoral advisor | George L. Kenyon[3] Irwin "Tack" Kuntz[3] |
| Website | profiles |
Patricia Clement Babbitt is a Professor and Principal Investigator (PI) in the School of Pharmacy at the University of California, San Francisco (UCSF).[2][4][5][6][7] She was elected a fellow of the International Society for Computational Biology (ISCB) in 2018 for outstanding contributions to the fields of computational biology and bioinformatics.[1] She is the Director of the UCSF Biological and Medical Informatics Graduate Program and serves on Advisory Boards for the UniProt Database, the Metacyc Metabolic Pathway Database, the HHMI Scientific Review Board, and as a Deputy Editor for PLoS Computational Biology.[8]
Education
Patricia Babbitt earned a Ph.D. in pharmaceutical chemistry in 1988 from the University of California, San Francisco.[9]
References
- ^ a b Anon (2018). "ISCB Fellows". iscb.org. International Society for Computational Biology. Archived from the original on 2017-03-20. Retrieved 2018-03-14.
- ^ a b c Patricia Babbitt publications indexed by Google Scholar
- ^ a b Babbit, Patricia Clement (1988). Sequence determination, expression, and site-directed mutagenesis of creatine kinase (PhD thesis). University of California, San Francisco. OCLC 19528718. ProQuest 303714424. (subscription required)
- ^ "Patricia Babbitt - UCSF Profiles". profiles.ucsf.edu.
- ^ "Babbitt Lab Website". babbittlab.ucsf.edu.
- ^ Gerlt, John A.; Babbitt, Patricia C. (2001). "Divergent Evolution of Enzymatic Function: Mechanistically Diverse Superfamilies and Functionally Distinct Suprafamilies". Annual Review of Biochemistry. 70 (1): 209–246. doi:10.1146/annurev.biochem.70.1.209. ISSN 0066-4154. PMID 11395407.
- ^ Radivojac, Predrag; Clark, Wyatt T; Oron, Tal Ronnen; Schnoes, Alexandra M; Wittkop, Tobias; Sokolov, Artem; Graim, Kiley; Funk, Christopher; Verspoor, Karin; Ben-Hur, Asa; Pandey, Gaurav; Yunes, Jeffrey M; Talwalkar, Ameet S; et al. (2013). "A large-scale evaluation of computational protein function prediction". Nature Methods. 10 (3): 221–227. doi:10.1038/nmeth.2340. ISSN 1548-7091. PMC 3584181. PMID 23353650.
- ^ "CMNS Distinguished Woman Faculty Lecture".
- ^ "Patricia Babbett, PhD". UCSF Profiles.
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