Solvation shell: Difference between revisions
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==Hydration shells of proteins== |
==Hydration shells of proteins== |
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The hydration shell (also sometimes called hydration layer) that forms around proteins is of particular importance in biochemistry. This interaction of the protein surface with the surrounding water is often referred to as protein hydration and is fundamental to the activity of the protein.<ref name="Mapping hydration dynamics">{{Cite journal | doi = 10.1073/pnas.0707647104 | pmc = 2141799 | title = Mapping hydration dynamics around a protein surface | pmid = 18003912 | year = 2007 | last1 = Zhang | first1 = L. | last2 = Wang | first2 = L. | last3 = Kao | first3 = Y. -T. | last4 = Qiu | first4 = W. | last5 = Yang | first5 = Y. | last6 = Okobiah | first6 = O. | last7 = Zhong | first7 = D. | journal = Proceedings of the National Academy of Sciences | volume = 104 | issue = 47 | pages = 18461–18466 |bibcode = 2007PNAS..10418461Z | doi-access = free }}</ref> The hydration layer around a protein has been found to have dynamics distinct from the bulk water to a distance of 1 nm. The duration of contact of a specific water molecule with the protein surface may be in the subnanosecond range while [[molecular dynamics]] simulations suggest the time water spends in the hydration shell before mixing with the outside bulk water could be in the femtosecond to picosecond range,<ref name="Mapping hydration dynamics" /> and that near features conventionally regarded as attractive to water, such as hydrogen bond donors, the water molecules are actually relatively weakly bound and are easily displaced.<ref name="Large-Scale Study of Hydration Environments through Hydration Sites">{{Citation | journal = J. Phys. Chem. B | doi = 10.1021/acs.jpcb.9b02490 | title = Large-Scale Study of Hydration Environments through Hydration Sites | pmid = 31025866 | year = 2019 | last1 = Irwin | first1 = B. W. J. | last2 = Vukovic | first2 = S. | last3 = Payne | first3 = M. C. | last4 = Huggins | first4 = D. J. | volume = 123 | issue = 19 | pages = 4220–4229 | url = https://www.repository.cam.ac.uk/handle/1810/292377 }}</ref> Solvation shell water molecules can also influence the molecular design of protein binders or inhibitors.<ref name="Free Energy Calculations of Mutations Involving a Tightly Bound Water Molecule and Ligand Substitutions in a Ligand Protein Complex">{{Citation | journal = Molecular Informatics | doi = 10.1002/minf.201000007 | title = Free Energy Calculations of Mutations Involving a Tightly Bound Water Molecule and Ligand Substitutions in a Ligand Protein Complex | pmid = 27463454 |
The hydration shell (also sometimes called hydration layer) that forms around proteins is of particular importance in biochemistry. This interaction of the protein surface with the surrounding water is often referred to as protein hydration and is fundamental to the activity of the protein.<ref name="Mapping hydration dynamics">{{Cite journal | doi = 10.1073/pnas.0707647104 | pmc = 2141799 | title = Mapping hydration dynamics around a protein surface | pmid = 18003912 | year = 2007 | last1 = Zhang | first1 = L. | last2 = Wang | first2 = L. | last3 = Kao | first3 = Y. -T. | last4 = Qiu | first4 = W. | last5 = Yang | first5 = Y. | last6 = Okobiah | first6 = O. | last7 = Zhong | first7 = D. | journal = Proceedings of the National Academy of Sciences | volume = 104 | issue = 47 | pages = 18461–18466 |bibcode = 2007PNAS..10418461Z | doi-access = free }}</ref> The hydration layer around a protein has been found to have dynamics distinct from the bulk water to a distance of 1 nm. The duration of contact of a specific water molecule with the protein surface may be in the subnanosecond range while [[molecular dynamics]] simulations suggest the time water spends in the hydration shell before mixing with the outside bulk water could be in the femtosecond to picosecond range,<ref name="Mapping hydration dynamics" /> and that near features conventionally regarded as attractive to water, such as hydrogen bond donors, the water molecules are actually relatively weakly bound and are easily displaced.<ref name="Large-Scale Study of Hydration Environments through Hydration Sites">{{Citation | journal = J. Phys. Chem. B | doi = 10.1021/acs.jpcb.9b02490 | title = Large-Scale Study of Hydration Environments through Hydration Sites | pmid = 31025866 | year = 2019 | last1 = Irwin | first1 = B. W. J. | last2 = Vukovic | first2 = S. | last3 = Payne | first3 = M. C. | last4 = Huggins | first4 = D. J. | volume = 123 | issue = 19 | pages = 4220–4229 | url = https://www.repository.cam.ac.uk/handle/1810/292377 }}</ref> Solvation shell water molecules can also influence the molecular design of protein binders or inhibitors.<ref name="Free Energy Calculations of Mutations Involving a Tightly Bound Water Molecule and Ligand Substitutions in a Ligand Protein Complex">{{Citation | journal = Molecular Informatics | doi = 10.1002/minf.201000007 | title = Free Energy Calculations of Mutations Involving a Tightly Bound Water Molecule and Ligand Substitutions in a Ligand Protein Complex | pmid = 27463454 | year = 2010 | last1 = Garcia-Sosa | first1 = A. T. | last2 = Mancera | first2 = R. L.| volume = 29 | issue = 8-9 | pages = 589-600 | url = https://onlinelibrary.wiley.com/doi/full/10.1002/minf.201000007 }}</ref> |
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With other solvents and solutes, varying steric and kinetic factors can also affect the solvation shell. |
With other solvents and solutes, varying steric and kinetic factors can also affect the solvation shell. |
Revision as of 07:15, 4 May 2023
A solvation shell or solvation sheath is the solvent interface of any chemical compound or biomolecule that constitutes the solute. When the solvent is water it is called a hydration shell or hydration sphere. The number of solvent molecules surrounding each unit of solute is called the hydration number of the solute.
A classic example is when water molecules arrange around a metal ion. If the metal ion is a cation, the electronegative oxygen atom of the water molecule would be attracted electrostatically to the positive charge on the metal ion. The result is a solvation shell of water molecules that surround the ion. This shell can be several molecules thick, dependent upon the charge of the ion, its distribution and spatial dimensions.
A number of molecules of solvent are involved in the solvation shell around anions and cations from a dissolved salt in a solvent. Metal ions in aqueous solutions form metal aquo complexes. This number can be determined by various methods like compressibility and NMR measurements among others.
Relation to activity coefficient of an electrolyte and its solvation shell number
The solvation shell number of a dissolved electrolyte can be linked to the statistical component of the activity coefficient of the electrolyte and to the ratio between the apparent molar volume of a dissolved electrolyte in a concentrated solution and the molar volume of the solvent (water):[clarification needed]
Hydration shells of proteins
The hydration shell (also sometimes called hydration layer) that forms around proteins is of particular importance in biochemistry. This interaction of the protein surface with the surrounding water is often referred to as protein hydration and is fundamental to the activity of the protein.[2] The hydration layer around a protein has been found to have dynamics distinct from the bulk water to a distance of 1 nm. The duration of contact of a specific water molecule with the protein surface may be in the subnanosecond range while molecular dynamics simulations suggest the time water spends in the hydration shell before mixing with the outside bulk water could be in the femtosecond to picosecond range,[2] and that near features conventionally regarded as attractive to water, such as hydrogen bond donors, the water molecules are actually relatively weakly bound and are easily displaced.[3] Solvation shell water molecules can also influence the molecular design of protein binders or inhibitors.[4]
With other solvents and solutes, varying steric and kinetic factors can also affect the solvation shell.
See also
- Activity coefficient
- Metal ions in aqueous solution
- Ion transport number
- Ionic radius
- Water model
- Poisson-Boltzmann equation
- Hydration energy
- Solvation
References
- ^ Glueckauf, E. (1955). "The influence of ionic hydration on activity coefficients in concentrated electrolyte solutions". Transactions of the Faraday Society. 51: 1235. doi:10.1039/TF9555101235.
- ^ a b Zhang, L.; Wang, L.; Kao, Y. -T.; Qiu, W.; Yang, Y.; Okobiah, O.; Zhong, D. (2007). "Mapping hydration dynamics around a protein surface". Proceedings of the National Academy of Sciences. 104 (47): 18461–18466. Bibcode:2007PNAS..10418461Z. doi:10.1073/pnas.0707647104. PMC 2141799. PMID 18003912.
- ^ Irwin, B. W. J.; Vukovic, S.; Payne, M. C.; Huggins, D. J. (2019), "Large-Scale Study of Hydration Environments through Hydration Sites", J. Phys. Chem. B, 123 (19): 4220–4229, doi:10.1021/acs.jpcb.9b02490, PMID 31025866
- ^ Garcia-Sosa, A. T.; Mancera, R. L. (2010), "Free Energy Calculations of Mutations Involving a Tightly Bound Water Molecule and Ligand Substitutions in a Ligand Protein Complex", Molecular Informatics, 29 (8–9): 589–600, doi:10.1002/minf.201000007, PMID 27463454