Jump to content

Micrococcus: Difference between revisions

From Wikipedia, the free encyclopedia
Content deleted Content added
Pathogenesis: Removed a redundant article
Tags: Mobile edit Mobile web edit
Taxonomy: take the hybridization from lede and the commented-out part in the infobox to show how much progress has been done to peel things out; + one GTDB thing about "Citricoccus terreus"
Line 9: Line 9:
| subdivision_ranks = Species
| subdivision_ranks = Species
| subdivision =
| subdivision =
<!-- Micrococcus agilis was reclassified as Arthrobacter agilis. -->
* ''[[Micrococcus aloeverae|M. aloeverae]]'' <small>Prakash et al. 2014</small>
* ''[[Micrococcus aloeverae|M. aloeverae]]'' <small>Prakash et al. 2014</small>
<!-- "Micrococcus amylovorus" was reclassified as Erwinia amylovora. -->
* ''[[Micrococcus antarcticus|M. antarcticus]]'' <small>Liu et al. 2000</small>
* ''[[Micrococcus antarcticus|M. antarcticus]]'' <small>Liu et al. 2000</small>
<!-- "Micrococcus calcoaceticus" was reclassified as Acinetobacter calcoaceticus. -->
<!-- "Micrococcus candicans" was not included in the Approved Lists. -->
<!-- "Micrococcus cinereus" was reclassified as Neisseria cinerea. -->
* ''[[Micrococcus cohnii|M. cohnii]]'' <small>Rieser et al. 2013</small>
* ''[[Micrococcus cohnii|M. cohnii]]'' <small>Rieser et al. 2013</small>
<!-- "Micrococcus cryophilus" was not included in the Approved Lists. -->
<!-- "Micrococcus denitrificans" was reclassified as Paracoccus denitrificans. -->
<!-- "Micrococcus diversus" was not included in the Approved Lists. -->
* ''[[Micrococcus endophyticus|M. endophyticus]]'' <small>Chen et al. 2009</small>
* ''[[Micrococcus endophyticus|M. endophyticus]]'' <small>Chen et al. 2009</small>
* ''[[Micrococcus flavus|M. flavus]]'' <small>Liu et al. 2007</small>
* ''[[Micrococcus flavus|M. flavus]]'' <small>Liu et al. 2007</small>
<!-- "Micrococcus fulvus" was reclassified as Myxococcus fulvus. -->
<!-- "Micrococcus gallicidus" was reclassified as Pasteurella multocida. -->
<!-- "Micrococcus glutamicus" was reclassified as Corynebacterium glutamicum. -->
<!-- Micrococcus halobius was reclassified as Nesterenkonia halobia. -->
<!-- "Micrococcus halodenitrificans" was reclassified as Halomonas halodenitrificans. -->
<!-- "Micrococcus hyicus" was reclassified as Staphylococcus hyicus. -->
<!-- "Micrococcus indolicus" was reclassified as Peptoniphilus indolicus. -->
<!-- Micrococcus kristinae was reclassified as Rothia kristinae. -->
<!-- Micrococcus lactis was reclassified as Neomicrococcus lactis. -->
* ''[[Micrococcus luteus|M. luteus]]'' <small>(Schroeter 1872) Cohn 1872 (Approved Lists 1980)</small>
* ''[[Micrococcus luteus|M. luteus]]'' <small>(Schroeter 1872) Cohn 1872 (Approved Lists 1980)</small>
* ''[[Micrococcus lylae|M. lylae]]'' <small>Kloos et al. 1974 (Approved Lists 1980)</small>
* ''[[Micrococcus lylae|M. lylae]]'' <small>Kloos et al. 1974 (Approved Lists 1980)</small>
<!-- "Micrococcus meningitidis" was reclassified as Neisseria meningitidis. -->
<!-- "Micrococcus mucilaginosus" was reclassified as Rothia mucilaginosa. -->
<!-- "Micrococcus niger" was reclassified as Peptococcus niger. -->
<!-- Micrococcus nishinomiyaensis was reclassified as Dermacoccus nishinomiyaensis. -->
<!-- "Micrococcus nitrosus" was reclassified as Nitrosococcus nitrosus. -->
<!-- "Micrococcus pelletieri" was reclassified as Actinomadura pelletieri. -->
<!-- "Micrococcus phosphoreus" was reclassified as Photobacterium phosphoreum. -->
<!-- "Micrococcus pneumoniae" was reclassified as Streptococcus pneumoniae. -->
<!-- "Micrococcus prevotii" Foubert and Douglas 1948 was reclassified as Anaerococcus prevotii. -->
<!-- "Micrococcus prodigiosus" was not included in the Approved Lists. -->
<!-- "Micrococcus radiodurans" was not included in the Approved Lists. -->
<!-- "Micrococcus radioproteolyticus" was not included in the Approved Lists. -->
<!-- Micrococcus roseus was reclassified as Kocuria rosea. -->
<!-- "Micrococcus saccharolyticus" was reclassified as Staphylococcus saccharolyticus. -->
<!-- Micrococcus sedentarius was reclassified as Kytococcus sedentarius. -->
<!-- "Micrococcus sodonensis" was not included in the Approved Lists. -->
<!-- "Micrococcus subflavus" was reclassified as Neisseria subflava. -->
* ''[[Micrococcus terreus|M. terreus]]'' <small>Zhang et al. 2010</small>
* ''[[Micrococcus terreus|M. terreus]]'' <small>Zhang et al. 2010</small>
<!-- Micrococcus varians was reclassified as Kocuria varians. -->
* ''[[Micrococcus yunnanensis|M. yunnanensis]]'' <small>Zhao et al. 2009</small>
* ''[[Micrococcus yunnanensis|M. yunnanensis]]'' <small>Zhao et al. 2009</small>
}}
}}
Line 57: Line 22:
'''''Micrococcus''''' (mi’ krō kŏk’ Əs) is a [[genus]] of [[bacteria]] in the [[Micrococcaceae]] [[family (biology)|family]]. ''Micrococcus'' occurs in a wide range of environments, including water, dust, and soil. Micrococci have [[Gram-positive]] spherical cells ranging from about 0.5 to 3 micrometers in diameter and typically appear in tetrads. They are [[catalase]] positive, [[oxidase]] positive, [[indole]] negative and [[citrate test|citrate]] negative. ''Micrococcus'' has a substantial [[cell wall]], which may comprise as much as 50% of the cell mass. The genome of ''Micrococcus'' is rich in [[guanine]] and [[cytosine]] (GC), typically exhibiting 65 to 75% [[GC-content]]. Micrococci often carry [[plasmid]]s (ranging from 1 to 100 MDa in size) that provide the organism with useful traits.
'''''Micrococcus''''' (mi’ krō kŏk’ Əs) is a [[genus]] of [[bacteria]] in the [[Micrococcaceae]] [[family (biology)|family]]. ''Micrococcus'' occurs in a wide range of environments, including water, dust, and soil. Micrococci have [[Gram-positive]] spherical cells ranging from about 0.5 to 3 micrometers in diameter and typically appear in tetrads. They are [[catalase]] positive, [[oxidase]] positive, [[indole]] negative and [[citrate test|citrate]] negative. ''Micrococcus'' has a substantial [[cell wall]], which may comprise as much as 50% of the cell mass. The genome of ''Micrococcus'' is rich in [[guanine]] and [[cytosine]] (GC), typically exhibiting 65 to 75% [[GC-content]]. Micrococci often carry [[plasmid]]s (ranging from 1 to 100 MDa in size) that provide the organism with useful traits.


Some species of ''Micrococcus'', such as ''M. luteus'' (yellow) and ''M. roseus'' (red) produce yellow or pink colonies when grown on mannitol salt agar. Isolates of ''M. luteus'' have been found to overproduce [[riboflavin]] when grown on toxic organic pollutants like pyridine.<ref>{{cite journal |vauthors=Sims GK, Sommers LE, Konopka A | title=Degradation of Pyridine by Micrococcus luteus Isolated from Soil |journal=Appl Environ Microbiol |volume=51 |issue=5 |pages=963–968 |year=1986 |pmid=16347070 |pmc=238995}}</ref> [[Hybrid (biology)|Hybridization]] studies indicate that species within the genus ''Micrococcus'' are not closely related, showing as little as 50% [[Homology (biology)#Homology of sequences in genetics|sequence similarity]].<ref>Stackebrandt, Erko, et al. "Taxonomic Dissection of the Genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend." International Journal of Systematic and Evolutionary Microbiology 45.4 (1995): 682-692.</ref> This suggests that some ''Micrococcus'' species may, on the basis of [[ribosomal RNA]] analysis, eventually be re-classified into other microbial genera.
Some species of ''Micrococcus'', such as ''M. luteus'' (yellow) and ''M. roseus'' (red) produce yellow or pink colonies when grown on mannitol salt agar. Isolates of ''M. luteus'' have been found to overproduce [[riboflavin]] when grown on toxic organic pollutants like pyridine.<ref>{{cite journal |vauthors=Sims GK, Sommers LE, Konopka A | title=Degradation of Pyridine by Micrococcus luteus Isolated from Soil |journal=Appl Environ Microbiol |volume=51 |issue=5 |pages=963–968 |year=1986 |pmid=16347070 |pmc=238995}}</ref>
== Taxonomy ==
[[Hybrid (biology)|Hybridization]] studies from 1995 indicate that species within the genus ''Micrococcus'' are not closely related, showing as little as 50% [[Homology (biology)#Homology of sequences in genetics|sequence similarity]].<ref>Stackebrandt, Erko, et al. "Taxonomic Dissection of the Genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend." International Journal of Systematic and Evolutionary Microbiology 45.4 (1995): 682-692.</ref> This suggests that some ''Micrococcus'' species may, on the basis of [[ribosomal RNA]] analysis, eventually be re-classified into other microbial genera.

The following species have been reclassified since then:
{{div col|colwidth=25em}}
* "M. amylovorus" was reclassified as ''[[Erwinia amylovora]]''.
* "M. calcoaceticus" was reclassified as ''[[Acinetobacter calcoaceticus]]''.
* "M. candicans" was not included in the Approved Lists.
* "M. cinereus" was reclassified as ''[[Neisseria cinerea]]''.
* "M. agilis" was reclassified as ''[[Arthrobacter agilis]]''.
* "M. cryophilus" was not included in the Approved Lists.
* "M. denitrificans" was reclassified as ''[[Paracoccus denitrificans]]''
* "M. diversus" was not included in the Approved Lists.
* "M. fulvus" was reclassified as ''[[Myxococcus fulvus]]''.
* "M. gallicidus" was reclassified as ''[[Pasteurella multocida]]''.
* "M. glutamicus" was reclassified as ''[[Corynebacterium glutamicum]]''.
* "M. halobius" was reclassified as ''[[Nesterenkonia halobia]]''.
* "M. halodenitrificans" was reclassified as ''[[Halomonas halodenitrificans]]''.
* "M. hyicus" was reclassified as ''[[Staphylococcus hyicus]]''.
* "M. indolicus" was reclassified as ''[[Peptoniphilus indolicus]]''.
* "M. kristinae" was reclassified as ''[[Rothia kristinae]]''.
* "M. lactis" was reclassified as ''[[Neomicrococcus lactis]]''.
* "M. meningitidis" was reclassified as ''[[Neisseria meningitidis]]''.
* "M. mucilaginosus" was reclassified as ''[[Rothia mucilaginosa]]''.
* "M. niger" was reclassified as ''[[Peptococcus niger]]''.
* "M. nishinomiyaensis" was reclassified as ''[[Dermacoccus nishinomiyaensis]]''.
* "M. nitrosus" was reclassified as ''[[Nitrosococcus nitrosus]]''.
* "M. pelletieri" was reclassified as ''[[Actinomadura pelletieri]]''.
* "M. phosphoreus" was reclassified as ''[[Photobacterium phosphoreum]]''.
* "M. pneumoniae" was reclassified as ''[[Streptococcus pneumoniae]]''.
* "M. prevotii" {{small|Foubert and Douglas 1948}} was reclassified as ''[[Anaerococcus prevotii]]''.
* "M. prodigiosus" was not included in the Approved Lists.
* "M. radiodurans" was not included in the Approved Lists.
* "M. radioproteolyticus" was not included in the Approved Lists.
* "M. roseus" was reclassified as ''[[Kocuria rosea]]''.
* "M. saccharolyticus" was reclassified as ''[[Staphylococcus saccharolyticus]]''.
* "M. sedentarius was reclassified as ''[[Kytococcus sedentarius]]''.
* "M. sodonensis" was not included in the Approved Lists.
* "M. subflavus" was reclassified as ''[[Neisseria subflava]]''.
* "M. varians" was reclassified as ''[[Kocuria varians]]''
{{div col end}}

In addition, [[GTDB]] (revision 214) indicates that ''Micrococcus terreus'' likely belongs in ''Citricoccus''.<ref>{{cite web |title=GTDB GCF_900116905.1 |url=https://gtdb.ecogenomic.org/genome?gid=GCF_900116905.1 |website=gtdb.ecogenomic.org |quote=GTDB Taxonomy: d__Bacteria; p__Actinomycetota; c__Actinomycetia; o__Actinomycetales; f__Micrococcaceae; g__Citricoccus; s__Citricoccus terreus}}</ref>


==Environmental==
==Environmental==

Revision as of 13:10, 25 October 2023

Micrococcus
Micrococcus mucilaginosis
Scientific classification Edit this classification
Domain: Bacteria
Phylum: Actinomycetota
Class: Actinomycetia
Order: Micrococcales
Family: Micrococcaceae
Genus: Micrococcus
Cohn 1872
Type species
Micrococcus luteus
(Schroeter 1872) Cohn 1872 (Approved Lists 1980)
Species

Micrococcus (mi’ krō kŏk’ Əs) is a genus of bacteria in the Micrococcaceae family. Micrococcus occurs in a wide range of environments, including water, dust, and soil. Micrococci have Gram-positive spherical cells ranging from about 0.5 to 3 micrometers in diameter and typically appear in tetrads. They are catalase positive, oxidase positive, indole negative and citrate negative. Micrococcus has a substantial cell wall, which may comprise as much as 50% of the cell mass. The genome of Micrococcus is rich in guanine and cytosine (GC), typically exhibiting 65 to 75% GC-content. Micrococci often carry plasmids (ranging from 1 to 100 MDa in size) that provide the organism with useful traits.

Some species of Micrococcus, such as M. luteus (yellow) and M. roseus (red) produce yellow or pink colonies when grown on mannitol salt agar. Isolates of M. luteus have been found to overproduce riboflavin when grown on toxic organic pollutants like pyridine.[1]

Taxonomy

Hybridization studies from 1995 indicate that species within the genus Micrococcus are not closely related, showing as little as 50% sequence similarity.[2] This suggests that some Micrococcus species may, on the basis of ribosomal RNA analysis, eventually be re-classified into other microbial genera.

The following species have been reclassified since then:

In addition, GTDB (revision 214) indicates that Micrococcus terreus likely belongs in Citricoccus.[3]

Environmental

Micrococci have been isolated from human skin, animal and dairy products, and beer. They are found in many other places in the environment, including water, dust, and soil. M. luteus on human skin transforms compounds in sweat into compounds with an unpleasant odor. Micrococci can grow well in environments with little water or high salt concentrations, including sportswear made with synthetic fabrics.[4] Most are mesophiles; some, like Micrococcus antarcticus (found in Antarctica) are psychrophiles.

Though not a spore former, Micrococcus cells can survive for an extended period of time, both at refrigeration temperatures, and in nutrient-poor conditions such as sealed in amber.[5][6]

Pathogenesis

Micrococcus is generally thought to be a saprotrophic or commensal organism, though it can be an opportunistic pathogen, particularly in hosts with compromised immune systems, such as HIV patients.[7] It can be difficult to identify Micrococcus as the cause of an infection, since the organism is normally present in skin microflora, and the genus is seldom linked to disease. In rare cases, death of immunocompromised patients has occurred from pulmonary infections caused by Micrococcus. Micrococci may be involved in other infections, including recurrent bacteremia, septic shock, septic arthritis, endocarditis, meningitis, and cavitating pneumonia (immunosuppressed patients).

Industrial uses

Micrococci, like many other representatives of the Actinobacteria, can be catabolically versatile, with the ability to utilize a wide range of unusual substrates, such as pyridine, herbicides, chlorinated biphenyls, and oil.[8][9] They are likely involved in detoxification or biodegradation of many other environmental pollutants.[10] Other Micrococcus isolates produce various useful products, such as long-chain (C21-C34) aliphatic hydrocarbons for lubricating oils.

References

  1. ^ Sims GK, Sommers LE, Konopka A (1986). "Degradation of Pyridine by Micrococcus luteus Isolated from Soil". Appl Environ Microbiol. 51 (5): 963–968. PMC 238995. PMID 16347070.
  2. ^ Stackebrandt, Erko, et al. "Taxonomic Dissection of the Genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend." International Journal of Systematic and Evolutionary Microbiology 45.4 (1995): 682-692.
  3. ^ "GTDB GCF_900116905.1". gtdb.ecogenomic.org. GTDB Taxonomy: d__Bacteria; p__Actinomycetota; c__Actinomycetia; o__Actinomycetales; f__Micrococcaceae; g__Citricoccus; s__Citricoccus terreus
  4. ^ "Why does my exercise clothing smell?". BBC News. 2016-08-31. Retrieved 2016-08-31.
  5. ^ Harrison AP, Pelczar MJ (1963). "Damage and Survival of Bacteria during Freeze-Drying and during Storage over a Ten-Year Period" (PDF). Journal of General Microbiology. 30 (3): 395–400. doi:10.1099/00221287-30-3-395. PMID 13952971. Retrieved 10 July 2016.
  6. ^ Greenblat CL, Baum J, Klein BY, Nachshon S, Koltunov V, Cano RJ (2004). "Micrococcus luteus – Survival in Amber". Microbial Ecology. 48 (1): 120–127. doi:10.1007/s00248-003-2016-5. PMID 15164240.
  7. ^ Smith K, Neafie R, Yeager J, Skelton H (1999). "Micrococcus folliculitis in HIV-1 disease". Br J Dermatol. 141 (3): 558–61. doi:10.1046/j.1365-2133.1999.03060.x. PMID 10583069.
  8. ^ Doddamani H, Ninnekar H (2001). "Biodegradation of carbaryl by a Micrococcus species". Curr Microbiol. 43 (1): 69–73. doi:10.1007/s002840010262. PMID 11375667.
  9. ^ Sims GK, O'loughlin EJ (1992). "Riboflavin Production during Growth of Micrococcus luteus on Pyridine". Appl Environ Microbiol. 58 (10): 3423–3425. PMC 183117. PMID 16348793.
  10. ^ Zhuang W, Tay J, Maszenan A, Krumholz L, Tay S (2003). "Importance of Gram-positive naphthalene-degrading bacteria in oil-contaminated tropical marine sediments". Lett Appl Microbiol. 36 (4): 251–7. doi:10.1046/j.1472-765X.2003.01297.x. PMID 12641721.