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The '''rbp3''' gene (and the '''RBP3''' protein) is commonly used as phylogenetic marker. It has first been used to provide evidence for [[monophyly]] of [[Chiroptera]]<ref>Stanhope, M.J., Czelusniak, J., Si, J.-S., Nickerson, J. and Goodman, M. 1992. A molecular perspective on mammalian evolution from the gene encoding interphotoreceptor retinoid binding protein, with convincing evidence for bat monophyly. Mol. Phylogenet. Evol. 1 : 148-160</ref>. Then, it has been used to infer the phylogeny of [[placental]] [[mammal]] orders<ref>Stanhope, M.J., Smith, M.R., Waddell, V.G., Porter, C.A., Shijvi, M.S. and Goodman, M. 1996. Mammalian evolution and the interphotoreceptor retinoid binding protein (IRBP) gene: convincing evidence for several superordinal clades. J. Mol. Evol. 43 : 83-92</ref><ref>Madsen, O., Scally, M., Douady, C.J., Kao, D.J., DeBry, R.W., Adkins, R., Amrine, H., Stanhope, M.J., de Jong, W.W. and Springer, M.S. 2001. Parallel adaptative radiations in two major clades of placental mammals. Nature 409 : 610-614</ref>, and the major [[clades]] of [[Rodentia]]<ref>Huchon, D., Madsen, O., Sibbald, M.J.J.B., Ament, K., Stanhope, M., Catzeflis, F., de Jong, W.W. & Douzery, E.J.P. 2002. Rodent phylogeny and a timescale for the evolution of Glires: evidence from an extensive taxon sampling using three nuclear genes. Mol. Biol. Evol. 19: 1053-1065</ref>, [[Macroscelidea]]<ref>Douady, C.J., Catzeflis, F., Raman, J., Springer, M.S. & Stanhope, M.J. 2003. The Sahara as a vicariant agent, and the role of Miocene climatic events, in the diversification of the mammalian order Macroscelidea (elephant shrews). Proc. Natl. Acad. Sci. USA 100: 8325-8330</ref>, and Primates<ref>Poux, C. & Douzery, E.J.P. 2004. Primate phylogeny, evolutionary rate variations, and divergence times: A contribution from the nuclear gene IRBP. Am. J. Phys. Anthropol. 124: 1-16</ref>. RBP3 is also useful at lower taxonomic levels, e.g., in rodents <ref>Jansa, S.A. & Weksler, M. 2004. Phylogeny of muroid rodents: relationships within and among major lineages as determined by IRBP gene sequences. Mol. Phylogenet. Evol. 31: 256-276.</ref>and primates<ref>Horvath, J.E., Weisrock, D.W., Embry, S.L., Fiorentino, I., Balhoff, J.P., Kappeler, P., Wray, G.A., Willard, H.F. & Yoder, A.D. 2008. Development and application of a phylogenomic toolkit: Resolving the evolutionary history of Madagascar's lemurs. Genome Res. 18: 489-499</ref>.
The '''rbp3''' gene (and the '''RBP3''' protein) is commonly used as phylogenetic marker. It has first been used to provide evidence for [[monophyly]] of [[Chiroptera]]<ref>Stanhope, M.J., Czelusniak, J., Si, J.-S., Nickerson, J. and Goodman, M. 1992. A molecular perspective on mammalian evolution from the gene encoding interphotoreceptor retinoid binding protein, with convincing evidence for bat monophyly. Mol. Phylogenet. Evol. 1 : 148-160</ref>. Then, it has been used to infer the [[phylogeny]] of
[[placental]] [[mammal]] orders<ref>Stanhope, M.J., Smith, M.R., Waddell, V.G., Porter, C.A., Shijvi, M.S. and Goodman, M. 1996. Mammalian evolution and the interphotoreceptor retinoid binding protein (IRBP) gene: convincing evidence for several superordinal clades. J. Mol. Evol. 43 : 83-92</ref><ref>Madsen, O., Scally, M., Douady, C.J., Kao, D.J., DeBry, R.W., Adkins, R., Amrine, H., Stanhope, M.J., de Jong, W.W. and Springer, M.S. 2001. Parallel adaptative radiations in two major clades of placental mammals. Nature 409 : 610-614</ref>, and of the major [[clades]] of [[Rodentia]]<ref>Huchon, D., Madsen, O., Sibbald, M.J.J.B., Ament, K., Stanhope, M., Catzeflis, F., de Jong, W.W. & Douzery, E.J.P. 2002. Rodent phylogeny and a timescale for the evolution of Glires: evidence from an extensive taxon sampling using three nuclear genes. Mol. Biol. Evol. 19: 1053-1065</ref>,
[[Macroscelidea]]<ref>Douady, C.J., Catzeflis, F., Raman, J., Springer, M.S. & Stanhope, M.J. 2003. The Sahara as a vicariant agent, and the role of Miocene climatic events, in the diversification of the mammalian order Macroscelidea (elephant shrews). Proc. Natl. Acad. Sci. USA 100: 8325-8330</ref>,
and [[Primates]]<ref>Poux, C. & Douzery, E.J.P. 2004. Primate phylogeny, evolutionary rate variations, and divergence times: A contribution from the nuclear gene IRBP. Am. J. Phys. Anthropol. 124: 1-16</ref>.
RBP3 is also useful at lower [[taxonomic]] levels, e.g., in rodents <ref>Jansa, S.A. & Weksler, M. 2004. Phylogeny of muroid rodents: relationships within and among major lineages as determined by IRBP gene sequences. Mol. Phylogenet. Evol. 31: 256-276.</ref>and primates<ref>Horvath, J.E., Weisrock, D.W., Embry, S.L., Fiorentino, I., Balhoff, J.P., Kappeler, P., Wray, G.A., Willard, H.F. & Yoder, A.D. 2008. Development and application of a phylogenomic toolkit: Resolving the evolutionary history of Madagascar's lemurs. Genome Res. 18: 489-499</ref>.


==References==
==References==

Revision as of 13:44, 12 August 2009

Template:PBB Retinol binding protein 3, interstitial (RBP3), also known as IRBP, is a human gene[1], with Ensembl gene reference ENSG00000107618.

Template:PBB Summary

The rbp3 gene (and the RBP3 protein) is commonly used as phylogenetic marker. It has first been used to provide evidence for monophyly of Chiroptera[2]. Then, it has been used to infer the phylogeny of placental mammal orders[3][4], and of the major clades of Rodentia[5], Macroscelidea[6], and Primates[7]. RBP3 is also useful at lower taxonomic levels, e.g., in rodents [8]and primates[9].

References

  1. ^ "Entrez Gene: RBP3 retinol binding protein 3, interstitial".
  2. ^ Stanhope, M.J., Czelusniak, J., Si, J.-S., Nickerson, J. and Goodman, M. 1992. A molecular perspective on mammalian evolution from the gene encoding interphotoreceptor retinoid binding protein, with convincing evidence for bat monophyly. Mol. Phylogenet. Evol. 1 : 148-160
  3. ^ Stanhope, M.J., Smith, M.R., Waddell, V.G., Porter, C.A., Shijvi, M.S. and Goodman, M. 1996. Mammalian evolution and the interphotoreceptor retinoid binding protein (IRBP) gene: convincing evidence for several superordinal clades. J. Mol. Evol. 43 : 83-92
  4. ^ Madsen, O., Scally, M., Douady, C.J., Kao, D.J., DeBry, R.W., Adkins, R., Amrine, H., Stanhope, M.J., de Jong, W.W. and Springer, M.S. 2001. Parallel adaptative radiations in two major clades of placental mammals. Nature 409 : 610-614
  5. ^ Huchon, D., Madsen, O., Sibbald, M.J.J.B., Ament, K., Stanhope, M., Catzeflis, F., de Jong, W.W. & Douzery, E.J.P. 2002. Rodent phylogeny and a timescale for the evolution of Glires: evidence from an extensive taxon sampling using three nuclear genes. Mol. Biol. Evol. 19: 1053-1065
  6. ^ Douady, C.J., Catzeflis, F., Raman, J., Springer, M.S. & Stanhope, M.J. 2003. The Sahara as a vicariant agent, and the role of Miocene climatic events, in the diversification of the mammalian order Macroscelidea (elephant shrews). Proc. Natl. Acad. Sci. USA 100: 8325-8330
  7. ^ Poux, C. & Douzery, E.J.P. 2004. Primate phylogeny, evolutionary rate variations, and divergence times: A contribution from the nuclear gene IRBP. Am. J. Phys. Anthropol. 124: 1-16
  8. ^ Jansa, S.A. & Weksler, M. 2004. Phylogeny of muroid rodents: relationships within and among major lineages as determined by IRBP gene sequences. Mol. Phylogenet. Evol. 31: 256-276.
  9. ^ Horvath, J.E., Weisrock, D.W., Embry, S.L., Fiorentino, I., Balhoff, J.P., Kappeler, P., Wray, G.A., Willard, H.F. & Yoder, A.D. 2008. Development and application of a phylogenomic toolkit: Resolving the evolutionary history of Madagascar's lemurs. Genome Res. 18: 489-499

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