Ensembl Genomes: Difference between revisions

Ensembl Genomes
Content
Description	An integrative resource for genome-scale data from non-vertebrate species.
Data types; captured	Genomic database
Organisms	pan
Contact
Research center	European Bioinformatics Institute
Primary citation	Kersey & al. (2012)
Release date	2009
Access
Website	http://ensemblgenomes.org/
Miscellaneous
Data release; frequency	4/5 times per year
Version	Release 23 (July 2013)

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Revision as of 23:52, 3 September 2014

Ensembl Genomes is a scientific project to provide genome-scale data from non-vertebrate species .^[1] The project is run by the European Bioinformatics Institute, and was launched in 2009 using the Ensembl technology .^[2] The main objective of the Ensembl Genomes database is to complement the main Ensembl database by introducing five additional web pages to include genome data for bacteria, fungi, invertebrate metazoa, plants, and protists.^[3] For each of the domains, the Ensembl tools are available for manipulation, analysis and visualization of genome data.

Browsing Ensembl Genomes

File:Anopheles gambiae Ensembl Genomes.png

Result page for a species search using Ensembl Genomes

Ensembl Genome allows to find genome data using gene name, gene symbol, accession number or the Variant ID. Genome search by species is also possible. Searching for a particular species using Ensembl Genomes redirects to a new page in which all the tools and information available for the species are shown. In general, each result page contains the following sections:

Genome Assembly
Comparative Genomics
Gene annotation
Variation

Current species

10,122 bacteria [1], including Bacillus, Borrelia, Buchnera, and Mycobacterium.
23 protists [2]
51 metazoa [3]
33 plants [4]
45 fungi [5]

Collaborations

Ensembl Genomes continuously expands the annotation data through collaboration with other organisations involved in genome annotation projects and research. The following organisations are collaborators of Ensembl Genomes^[4]:

References

^ ^a ^b Template:Cite PMID
^ Template:Cite PMID
^ "About Ensembl Genomes". http://ensemblgenomes.org/info/about. Ensembl. Retrieved 2 September 2014. {{cite web}}: External link in |website= (help)
^ "Collaborators - Ensembl Genomes". http://ensemblgenomes.org/info/about/collaborations. Ensembl Genomes. Retrieved 3 September 2014. {{cite web}}: External link in |website= (help)

External links

[kersey-1] Template:Cite PMID

[2] Template:Cite PMID

[3] "About Ensembl Genomes". http://ensemblgenomes.org/info/about. Ensembl. Retrieved 2 September 2014. {{cite web}}: External link in |website= (help)

[4] "Collaborators - Ensembl Genomes". http://ensemblgenomes.org/info/about/collaborations. Ensembl Genomes. Retrieved 3 September 2014. {{cite web}}: External link in |website= (help)

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 The project is run by the [[European Bioinformatics Institute]], and was launched in 2009 using the [[Ensembl]] technology
 .<ref>{{cite PMID|19033362|noedit}}</ref> The main objective of the Ensembl Genomes database is to complement the main Ensembl
-database by introducing five additional web pages to include genome data for [[bacteria]], [[fungi]], invertebrate [[metazoa]], [[plant]]s, and [[protist]]s.<ref>{{cite web|title=About Ensembl Genomes|url=http://ensemblgenomes.org/info/about|website=http://ensemblgenomes.org/info/about|publisher=Ensembl|accessdate=2 September 2014}}</ref> For each of the domains, the Ensembl tools are available for manipulation, analysis and visualization of genome data.
+database by introducing five additional web pages to include genome data for [[bacteria]], [[fungi]], invertebrate [[metazoa]], [[plant]]s, and [[protist]]s.<ref>{{cite web|title=About Ensembl Genomes|url=http://ensemblgenomes.org/info/about|website=http://ensemblgenomes.org/info/about|publisher=Ensembl|accessdate=2 September 2014}}</ref> For each of the domains, the [[Ensembl]] tools are available for manipulation, analysis and visualization of genome data.
 == Browsing Ensembl Genomes ==