Thermales-rpoB RNA motif: Difference between revisions
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{{Infobox rfam |
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| Name = Thermales-rpoB |
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| image = RF03109.svg |
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| width = |
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| caption = Consensus [[secondary structure]] and [[sequence conservation]] of Thermales-rpoB RNA |
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| Symbol = Thermales-rpoB |
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| AltSymbols = |
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| Rfam = RF03109 |
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| miRBase = |
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| miRBase_family = |
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| RNA_type = [[Cis-regulatory element | Cis-reg]] |
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| Tax_domain = |
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| GO = |
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| SO = {{SO|0005836}} |
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| CAS_number = |
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| EntrezGene = |
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| HGNCid = |
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| OMIM = |
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| RefSeq = |
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| Chromosome = |
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| Arm = |
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| Band = |
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| LocusSupplementaryData = |
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}} |
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{{DISPLAYTITLE:Thermales-''rpoB'' RNA motif}} |
{{DISPLAYTITLE:Thermales-''rpoB'' RNA motif}} |
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The '''Thermales-''rpoB'' RNA motif''' is a conserved [[RNA]] structure that was [[Bioinformatics discovery of non-coding RNAs|discovered by bioinformatics]].<ref name="Weinberg2017b">{{cite journal |vauthors=Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR, Sherlock ME, Breaker RR |title=Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions |journal=Nucleic Acids Res. |volume=45 |issue=18 |pages=10811-10823 |date=October 2017 |pmid=28977401 |pmc=5737381 |doi=10.1093/nar/gkx699 |url=}}</ref> |
The '''Thermales-''rpoB'' RNA motif''' is a conserved [[RNA]] structure that was [[Bioinformatics discovery of non-coding RNAs|discovered by bioinformatics]].<ref name="Weinberg2017b">{{cite journal |vauthors=Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR, Sherlock ME, Breaker RR |title=Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions |journal=Nucleic Acids Res. |volume=45 |issue=18 |pages=10811-10823 |date=October 2017 |pmid=28977401 |pmc=5737381 |doi=10.1093/nar/gkx699 |url=}}</ref> |
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Revision as of 13:22, 24 January 2019
| Thermales-rpoB | |
|---|---|
 Consensus secondary structure and sequence conservation of Thermales-rpoB RNA | |
| Identifiers | |
| Symbol | Thermales-rpoB |
| Rfam | RF03109 |
| Other data | |
| RNA type | Cis-reg |
| SO | SO:0005836 |
| PDB structures | PDBe |
The Thermales-rpoB RNA motif is a conserved RNA structure that was discovered by bioinformatics.[1]
Thermales-rpoB motifs are found in Thermales.
Thermales-rpoB motif RNAs likely function as cis-regulatory elements, in view of their positions upstream of protein-coding genes, which invariably encode subunits of RNA polymerase. Such genes are also believed to be regulated by the Rhodo-rpoB RNA motif, although these two motifs occur in quite diverged lineages of bacteria.
References
- ^ Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR, Sherlock ME, Breaker RR (October 2017). "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids Res. 45 (18): 10811–10823. doi:10.1093/nar/gkx699. PMC 5737381. PMID 28977401.