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| thesis_url = https://search.proquest.com/docview/303714424
| thesis_url = https://search.proquest.com/docview/303714424
| thesis_year = 1988
| thesis_year = 1988
| doctoral_advisor = George L. Kenyon<ref name=bphd/><br>[[Irwin "Tack" Kuntz]]<ref name=bphd>{{cite thesis|degree=PhD|publisher=University of California, San Francisco|title=Sequence determination, expression, and site-directed mutagenesis of creatine kinase|first=Patricia Clement|last=Babbit|year=1988|oclc=19528718|id={{ProQuest|303714424}}}} {{subscription required}}</ref>
| doctoral_advisor = George L. Kenyon<ref name=bphd/><br>[[Irwin "Tack" Kuntz|Irwin Kuntz]]<ref name=bphd>{{cite thesis|degree=PhD|publisher=University of California, San Francisco|title=Sequence determination, expression, and site-directed mutagenesis of creatine kinase|first=Patricia Clement|last=Babbit|year=1988|oclc=19528718|id={{ProQuest|303714424}}}} {{subscription required}}</ref>
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| partner = <!--(or | partners = )-->
| partner = <!--(or | partners = )-->
| children =
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| website = {{URL|http://profiles.ucsf.edu/patricia.babbitt}}
| website = {{Official URL}}
}}
}}


'''Patricia Clement Babbitt''' is a [[Professor]] and [[Principal Investigator]] (PI) in the School of [[Pharmacy]] at the [[University of California, San Francisco]] (UCSF).<ref name=googlescholar>{{Google scholar id}}</ref><ref name=ucsfprofile>{{cite web|url=http://profiles.ucsf.edu/patricia.babbitt|title=Patricia Babbitt - UCSF Profiles|website=profiles.ucsf.edu}}</ref><ref name=lab>{{cite web|url=http://babbittlab.ucsf.edu/|title=Babbitt Lab Website|website=babbittlab.ucsf.edu}}</ref><ref name="GerltBabbitt2001">{{cite journal|last1=Gerlt|first1=John A.|last2=Babbitt|first2=Patricia C.|title=Divergent Evolution of Enzymatic Function: Mechanistically Diverse Superfamilies and Functionally Distinct Suprafamilies|journal=[[Annual Review of Biochemistry]]|volume=70|issue=1|year=2001|pages=209–246|issn=0066-4154|doi=10.1146/annurev.biochem.70.1.209|pmid= 11395407}} {{closed access}}</ref><ref name="RadivojacClark2013">{{cite journal|last1=Radivojac|first1=Predrag|last2=Clark|first2=Wyatt T|last3=Oron|first3=Tal Ronnen|last4=Schnoes|first4=Alexandra M|last5=Wittkop|first5=Tobias|last6=Sokolov|first6=Artem|last7=Graim|first7=Kiley|last8=Funk|first8=Christopher|last9=Verspoor|first9=Karin|last10=Ben-Hur|first10=Asa|last11=Pandey|first11=Gaurav|last12=Yunes|first12=Jeffrey M|last13=Talwalkar|first13=Ameet S|last14=Repo|first14=Susanna|last15=Souza|first15=Michael L|last16=Piovesan|first16=Damiano|last17=Casadio|first17=Rita|last18=Wang|first18=Zheng|last19=Cheng|first19=Jianlin|last20=Fang|first20=Hai|last21=Gough|first21=Julian|last22=Koskinen|first22=Patrik|last23=Törönen|first23=Petri|last24=Nokso-Koivisto|first24=Jussi|last25=Holm|first25=Liisa|last26=Cozzetto|first26=Domenico|last27=Buchan|first27=Daniel W A|last28=Bryson|first28=Kevin|last29=Jones|first29=David T|last30=Limaye|first30=Bhakti|last31=Inamdar|first31=Harshal|last32=Datta|first32=Avik|last33=Manjari|first33=Sunitha K|last34=Joshi|first34=Rajendra|last35=Chitale|first35=Meghana|last36=Kihara|first36=Daisuke|last37=Lisewski|first37=Andreas M|last38=Erdin|first38=Serkan|last39=Venner|first39=Eric|last40=Lichtarge|first40=Olivier|last41=Rentzsch|first41=Robert|last42=Yang|first42=Haixuan|last43=Romero|first43=Alfonso E|last44=Bhat|first44=Prajwal|last45=Paccanaro|first45=Alberto|last46=Hamp|first46=Tobias|last47=Kaßner|first47=Rebecca|last48=Seemayer|first48=Stefan|last49=Vicedo|first49=Esmeralda|last50=Schaefer|first50=Christian|last51=Achten|first51=Dominik|last52=Auer|first52=Florian|last53=Boehm|first53=Ariane|last54=Braun|first54=Tatjana|last55=Hecht|first55=Maximilian|last56=Heron|first56=Mark|last57=Hönigschmid|first57=Peter|last58=Hopf|first58=Thomas A|last59=Kaufmann|first59=Stefanie|last60=Kiening|first60=Michael|last61=Krompass|first61=Denis|last62=Landerer|first62=Cedric|last63=Mahlich|first63=Yannick|last64=Roos|first64=Manfred|last65=Björne|first65=Jari|last66=Salakoski|first66=Tapio|last67=Wong|first67=Andrew|last68=Shatkay|first68=Hagit|last69=Gatzmann|first69=Fanny|last70=Sommer|first70=Ingolf|last71=Wass|first71=Mark N|last72=Sternberg|first72=Michael J E|last73=Škunca|first73=Nives|last74=Supek|first74=Fran|last75=Bošnjak|first75=Matko|last76=Panov|first76=Panče|last77=Džeroski|first77=Sašo|last78=Šmuc|first78=Tomislav|last79=Kourmpetis|first79=Yiannis A I|last80=van Dijk|first80=Aalt D J|last81=Braak|first81=Cajo J F ter|last82=Zhou|first82=Yuanpeng|last83=Gong|first83=Qingtian|last84=Dong|first84=Xinran|last85=Tian|first85=Weidong|last86=Falda|first86=Marco|last87=Fontana|first87=Paolo|last88=Lavezzo|first88=Enrico|last89=Di Camillo|first89=Barbara|last90=Toppo|first90=Stefano|last91=Lan|first91=Liang|last92=Djuric|first92=Nemanja|last93=Guo|first93=Yuhong|last94=Vucetic|first94=Slobodan|last95=Bairoch|first95=Amos|last96=Linial|first96=Michal|last97=Babbitt|first97=Patricia C|last98=Brenner|first98=Steven E|last99=Orengo|first99=Christine|last100=Rost|first100=Burkhard|last101=Mooney|first101=Sean D|last102=Friedberg|first102=Iddo|display-authors=13|title=A large-scale evaluation of computational protein function prediction|journal=[[Nature Methods]]|volume=10|issue=3|year=2013|pages=221–227|issn=1548-7091|doi=10.1038/nmeth.2340|pmid=23353650|pmc=3584181 }} {{open access}}</ref> She was elected a [[fellow]] of the [[International Society for Computational Biology]] (ISCB) in 2018 for outstanding contributions to the fields of computational biology and bioinformatics.<ref name=iscb>{{cite web|url=https://www.iscb.org/iscb-fellows|title=ISCB Fellows|website=iscb.org|author=Anon|year=2018|publisher=International Society for Computational Biology|access-date=2018-03-14|archive-url=https://web.archive.org/web/20170320114530/https://www.iscb.org/iscb-fellows|archive-date=2017-03-20|url-status=dead}}</ref> She is the Director of the UCSF Biological and Medical Informatics Graduate Program and serves on Advisory Boards for the UniProt Database, the Metacyc Metabolic Pathway Database, the HHMI Scientific Review Board, and as a Deputy Editor for PLoS Computational Biology.<ref name="lecture">{{cite web |title=CMNS Distinguished Woman Faculty Lecture |url=https://cmns.umd.edu/news-events/events/3444}}</ref>
'''Patricia Clement Babbitt''' is a [[Professor]] and [[Principal Investigator]] (PI) in the school of [[pharmacy]] at the [[University of California, San Francisco]] (UCSF).<ref name=googlescholar>{{Google scholar id}}</ref><ref name=ucsfprofile>{{cite web|url=http://profiles.ucsf.edu/patricia.babbitt|title=Patricia Babbitt UCSF Profile|website=profiles.ucsf.edu}}</ref><ref name=lab>{{cite web|url=http://babbittlab.ucsf.edu/|title=Babbitt Lab Website|website=babbittlab.ucsf.edu}}</ref><ref name="GerltBabbitt2001">{{cite journal|last1=Gerlt|first1=John A.|last2=Babbitt|first2=Patricia C.|title=Divergent Evolution of Enzymatic Function: Mechanistically Diverse Superfamilies and Functionally Distinct Suprafamilies|journal=[[Annual Review of Biochemistry]]|volume=70|issue=1|year=2001|pages=209–246|issn=0066-4154|doi=10.1146/annurev.biochem.70.1.209|pmid= 11395407}} {{closed access}}</ref><ref name="RadivojacClark2013">{{cite journal|last1=Radivojac|first1=Predrag|last2=Clark|first2=Wyatt T|last3=Oron|first3=Tal Ronnen|last4=Schnoes|first4=Alexandra M|last5=Wittkop|first5=Tobias|last6=Sokolov|first6=Artem|last7=Graim|first7=Kiley|last8=Funk|first8=Christopher|last9=Verspoor|first9=Karin|last10=Ben-Hur|first10=Asa|last11=Pandey|first11=Gaurav|last12=Yunes|first12=Jeffrey M|last13=Talwalkar|first13=Ameet S|last14=Repo|first14=Susanna|last15=Souza|first15=Michael L|last16=Piovesan|first16=Damiano|last17=Casadio|first17=Rita|last18=Wang|first18=Zheng|last19=Cheng|first19=Jianlin|last20=Fang|first20=Hai|last21=Gough|first21=Julian|last22=Koskinen|first22=Patrik|last23=Törönen|first23=Petri|last24=Nokso-Koivisto|first24=Jussi|last25=Holm|first25=Liisa|last26=Cozzetto|first26=Domenico|last27=Buchan|first27=Daniel W A|last28=Bryson|first28=Kevin|last29=Jones|first29=David T|last30=Limaye|first30=Bhakti|last31=Inamdar|first31=Harshal|last32=Datta|first32=Avik|last33=Manjari|first33=Sunitha K|last34=Joshi|first34=Rajendra|last35=Chitale|first35=Meghana|last36=Kihara|first36=Daisuke|last37=Lisewski|first37=Andreas M|last38=Erdin|first38=Serkan|last39=Venner|first39=Eric|last40=Lichtarge|first40=Olivier|last41=Rentzsch|first41=Robert|last42=Yang|first42=H|last43=Romero|first43=Alfonso E|last44=Bhat|first44=Prajwal|last45=Paccanaro|first45=Alberto|last46=Hamp|first46=Tobias|last47=Kaßner|first47=Rebecca|last48=Seemayer|first48=Stefan|last49=Vicedo|first49=Esmeralda|last50=Schaefer|first50=Christian|last51=Achten|first51=Dominik|last52=Auer|first52=Florian|last53=Boehm|first53=Ariane|last54=Braun|first54=Tatjana|last55=Hecht|first55=Maximilian|last56=Heron|first56=Mark|last57=Hönigschmid|first57=Peter|last58=Hopf|first58=Thomas A|last59=Kaufmann|first59=Stefanie|last60=Kiening|first60=Michael|last61=Krompass|first61=Denis|last62=Landerer|first62=Cedric|last63=Mahlich|first63=Yannick|last64=Roos|first64=Manfred|last65=Björne|first65=Jari|last66=Salakoski|first66=Tapio|last67=Wong|first67=Andrew|last68=Shatkay|first68=Hagit|last69=Gatzmann|first69=Fanny|last70=Sommer|first70=Ingolf|last71=Wass|first71=Mark N|last72=Sternberg|first72=Michael J E|last73=Škunca|first73=Nives|last74=Supek|first74=Fran|last75=Bošnjak|first75=Matko|last76=Panov|first76=Panče|last77=Džeroski|first77=Sašo|last78=Šmuc|first78=Tomislav|last79=Kourmpetis|first79=Yiannis A I|last80=van Dijk|first80=Aalt D J|last81=Braak|first81=Cajo J F ter|last82=Zhou|first82=Yuanpeng|last83=Gong|first83=Qingtian|last84=Dong|first84=Xinran|last85=Tian|first85=Weidong|last86=Falda|first86=Marco|last87=Fontana|first87=Paolo|last88=Lavezzo|first88=Enrico|last89=Di Camillo|first89=Barbara|last90=Toppo|first90=Stefano|last91=Lan|first91=Liang|last92=Djuric|first92=Nemanja|last93=Guo|first93=Yuhong|last94=Vucetic|first94=Slobodan|last95=Bairoch|first95=Amos|last96=Linial|first96=Michal|last97=Babbitt|first97=Patricia C|last98=Brenner|first98=Steven E|last99=Orengo|first99=Christine|last100=Rost|first100=Burkhard|last101=Mooney|first101=Sean D|last102=Friedberg|first102=Iddo|display-authors=13|title=A large-scale evaluation of computational protein function prediction|journal=[[Nature Methods]]|volume=10|issue=3|year=2013|pages=221–227|issn=1548-7091|doi=10.1038/nmeth.2340|pmid=23353650|pmc=3584181 }} {{open access}}</ref><ref name=epmc>{{EuropePMC}}</ref>


==Education==
==Education==
Patricia Babbitt earned a Ph.D. in pharmaceutical chemistry in 1988 from the University of California, San Francisco.<ref>{{cite web |title=Patricia Babbett, PhD |url=https://profiles.ucsf.edu/patricia.babbitt#toc-id1 |website=UCSF Profiles}}</ref>
Patricia Babbitt earned a [[PhD]] in [[medicinal chemistry|pharmaceutical chemistry]] in 1988 from the University of California, San Francisco.<ref name=bphd/><ref name=ucsfprofile/> for research supervised by George L. Kenyon and [[Irwin "Tack" Kuntz|Irwin Kuntz]].<ref name=bphd/>

==Career and research==
Babbitt serves as the director of the UCSF [[bioinformatics]] and [[medical informatics]] graduate program.{{fact}} She also serves on the advisory boards for the [[UniProt]], [[InterPro]]<ref name="FinnAttwood2017">{{cite journal|last1=Finn|first1=Robert D.|last2=Attwood|first2=Teresa K.|last3=Babbitt|first3=Patricia C.|last4=Bateman|first4=Alex|last5=Bork|first5=Peer|last6=Bridge|first6=Alan J.|last7=Chang|first7=Hsin-Yu|last8=Dosztányi|first8=Zsuzsanna|last9=El-Gebali|first9=Sara|last10=Fraser|first10=Matthew|last11=Gough|first11=Julian|last12=Haft|first12=David|last13=Holliday|first13=Gemma L.|last14=Huang|first14=Hongzhan|last15=Huang|first15=Xiaosong|last16=Letunic|first16=Ivica|last17=Lopez|first17=Rodrigo|last18=Lu|first18=Shennan|last19=Marchler-Bauer|first19=Aron|last20=Mi|first20=Huaiyu|last21=Mistry|first21=Jaina|last22=Natale|first22=Darren A.|last23=Necci|first23=Marco|last24=Nuka|first24=Gift|last25=Orengo|first25=Christine A.|last26=Park|first26=Youngmi|last27=Pesseat|first27=Sebastien|last28=Piovesan|first28=Damiano|last29=Potter|first29=Simon C.|last30=Rawlings|first30=Neil D.|last31=Redaschi|first31=Nicole|last32=Richardson|first32=Lorna|last33=Rivoire|first33=Catherine|last34=Sangrador-Vegas|first34=Amaia|last35=Sigrist|first35=Christian|last36=Sillitoe|first36=Ian|last37=Smithers|first37=Ben|last38=Squizzato|first38=Silvano|last39=Sutton|first39=Granger|last40=Thanki|first40=Narmada|last41=Thomas|first41=Paul D|last42=Tosatto|first42=Silvio C. E.|last43=Wu|first43=Cathy H.|last44=Xenarios|first44=Ioannis|last45=Yeh|first45=Lai-Su|last46=Young|first46=Siew-Yit|last47=Mitchell|first47=Alex L.|pmid= 27899635 |pmc=5210578 |title=InterPro in 2017—beyond protein family and domain annotations|journal=Nucleic Acids Research|volume=45|issue=D1|year=2017|pages=D190–D199|issn=0305-1048|doi=10.1093/nar/gkw1107}}</ref> and [[MetaCyc]] databases, the [[Howard Hughes Medical Institute]] (HHMI) scientific review board, and as a deputy editor for ''[[PLOS Computational Biology]]''.<ref name="lecture">{{cite web |title=CMNS Distinguished Woman Faculty Lecture |url=https://cmns.umd.edu/news-events/events/3444|website=umd.edu|publisher=[[University of Maryland]]}}</ref> Her research interests include bioinformatics and [[computational biology]].<ref name=googlescholar/><ref name=epmc/><ref name=dblp>{{DBLP}}</ref>
===Awards and honors===
Babbitt was elected a [[Fellow]] of the [[International Society for Computational Biology]] (ISCB) in 2018 for “outstanding contributions to the fields of computational biology and bioinformatics”.<ref name=iscb>{{cite web|url=https://www.iscb.org/iscb-fellows|title=ISCB Fellows|website=iscb.org|author=Anon|year=2018|publisher=International Society for Computational Biology|access-date=2018-03-14|archive-url=https://web.archive.org/web/20170320114530/https://www.iscb.org/iscb-fellows|archive-date=2017-03-20|url-status=dead}}</ref>


==References==
==References==

Revision as of 10:24, 12 May 2020

Patricia Babbitt
Born
Patricia Clement Babbitt
EducationUniversity of California, San Francisco (PhD)
AwardsISCB Fellow (2018)[1]
Scientific career
FieldsBioinformatics[2]
Computational biology[2]
InstitutionsUniversity of California, San Francisco
ThesisSequence determination, expression, and site-directed mutagenesis of creatine kinase (1988)
Doctoral advisorGeorge L. Kenyon[3]
Irwin Kuntz[3]
Websiteprofiles.ucsf.edu/patricia.babbitt Edit this at Wikidata

Patricia Clement Babbitt is a Professor and Principal Investigator (PI) in the school of pharmacy at the University of California, San Francisco (UCSF).[2][4][5][6][7][8]

Education

Patricia Babbitt earned a PhD in pharmaceutical chemistry in 1988 from the University of California, San Francisco.[3][4] for research supervised by George L. Kenyon and Irwin Kuntz.[3]

Career and research

Babbitt serves as the director of the UCSF bioinformatics and medical informatics graduate program.[citation needed] She also serves on the advisory boards for the UniProt, InterPro[9] and MetaCyc databases, the Howard Hughes Medical Institute (HHMI) scientific review board, and as a deputy editor for PLOS Computational Biology.[10] Her research interests include bioinformatics and computational biology.[2][8][11]

Awards and honors

Babbitt was elected a Fellow of the International Society for Computational Biology (ISCB) in 2018 for “outstanding contributions to the fields of computational biology and bioinformatics”.[1]

References

  1. ^ a b Anon (2018). "ISCB Fellows". iscb.org. International Society for Computational Biology. Archived from the original on 2017-03-20. Retrieved 2018-03-14.
  2. ^ a b c d Patricia Babbitt publications indexed by Google Scholar Edit this at Wikidata
  3. ^ a b c d Babbit, Patricia Clement (1988). Sequence determination, expression, and site-directed mutagenesis of creatine kinase (PhD thesis). University of California, San Francisco. OCLC 19528718. ProQuest 303714424. (subscription required)
  4. ^ a b "Patricia Babbitt UCSF Profile". profiles.ucsf.edu.
  5. ^ "Babbitt Lab Website". babbittlab.ucsf.edu.
  6. ^ Gerlt, John A.; Babbitt, Patricia C. (2001). "Divergent Evolution of Enzymatic Function: Mechanistically Diverse Superfamilies and Functionally Distinct Suprafamilies". Annual Review of Biochemistry. 70 (1): 209–246. doi:10.1146/annurev.biochem.70.1.209. ISSN 0066-4154. PMID 11395407. Closed access icon
  7. ^ Radivojac, Predrag; Clark, Wyatt T; Oron, Tal Ronnen; Schnoes, Alexandra M; Wittkop, Tobias; Sokolov, Artem; Graim, Kiley; Funk, Christopher; Verspoor, Karin; Ben-Hur, Asa; Pandey, Gaurav; Yunes, Jeffrey M; Talwalkar, Ameet S; et al. (2013). "A large-scale evaluation of computational protein function prediction". Nature Methods. 10 (3): 221–227. doi:10.1038/nmeth.2340. ISSN 1548-7091. PMC 3584181. PMID 23353650. Open access icon
  8. ^ a b Patricia Babbitt publications from Europe PubMed Central
  9. ^ Finn, Robert D.; Attwood, Teresa K.; Babbitt, Patricia C.; Bateman, Alex; Bork, Peer; Bridge, Alan J.; Chang, Hsin-Yu; Dosztányi, Zsuzsanna; El-Gebali, Sara; Fraser, Matthew; Gough, Julian; Haft, David; Holliday, Gemma L.; Huang, Hongzhan; Huang, Xiaosong; Letunic, Ivica; Lopez, Rodrigo; Lu, Shennan; Marchler-Bauer, Aron; Mi, Huaiyu; Mistry, Jaina; Natale, Darren A.; Necci, Marco; Nuka, Gift; Orengo, Christine A.; Park, Youngmi; Pesseat, Sebastien; Piovesan, Damiano; Potter, Simon C.; Rawlings, Neil D.; Redaschi, Nicole; Richardson, Lorna; Rivoire, Catherine; Sangrador-Vegas, Amaia; Sigrist, Christian; Sillitoe, Ian; Smithers, Ben; Squizzato, Silvano; Sutton, Granger; Thanki, Narmada; Thomas, Paul D; Tosatto, Silvio C. E.; Wu, Cathy H.; Xenarios, Ioannis; Yeh, Lai-Su; Young, Siew-Yit; Mitchell, Alex L. (2017). "InterPro in 2017—beyond protein family and domain annotations". Nucleic Acids Research. 45 (D1): D190–D199. doi:10.1093/nar/gkw1107. ISSN 0305-1048. PMC 5210578. PMID 27899635. {{cite journal}}: no-break space character in |first42= at position 7 (help)
  10. ^ "CMNS Distinguished Woman Faculty Lecture". umd.edu. University of Maryland.
  11. ^ Patricia Babbitt at DBLP Bibliography Server Edit this at Wikidata