Jump to content

User:Slacksushi/Burkholderia: Difference between revisions

From Wikipedia, the free encyclopedia
Browse history interactively
Next edit →
Content deleted Content added
VisualWikitext
started the sandbox page
 
No edit summary
Line 1: Line 1:
==Taxonomy==
start
''Burkholderia'' species form a [[monophyly|monophyletic]] group within the [[Burkholderiales]] order of the [[Betaproteobacteria]]. Currently, the 48 validly named species can be distinguished from related genera (i.e. ''[[Paraburkholderia]]'') and all other bacteria by [[conserved signature indels]] in a variety of proteins.<ref name=Sawana/> These indels represent exclusive common ancestry shared among all ''Burkholderia'' species.

The genus has three distinct [[monophyly|monophyletic]] clusters. One group consists of all species belonging to the ''Burkholderia cepacia'' complex, another clade comprises ''B. pseudomallei'' and closely related species, and the last clade encompasses of most of the [[phytopathology|phytogenic]] species within the genus, including ''[[Burkholderia glumae|B. glumae]]'' and ''[[Burkholderia gladioli|B. gladioli]] ''.<ref name=Sawana/> Conserved signature indels are specific for each of these subgroups within the genus that aid in demarcating members of this extremely large and diverse genus.<ref name=Sawana/><ref name=pmid27279642>{{cite journal |vauthors=Gupta RS |title=Impact of genomics on the understanding of microbial evolution and classification: the importance of Darwin's views on classification |journal= FEMS Microbiol Rev |volume=40|issue=4|pages=520–53 |date=2016|pmid=27279642 |doi=10.1093/femsre/fuw011 |url=http://femsre.oxfordjournals.org/content/early/2016/06/07/femsre.fuw011.abstract|doi-access=free }}</ref>

==Species==
List of species:<ref name="LPSN">{{cite web|url=http://www.bacterio.net|title=List of prokaryotic names with standing in nomenclature|accessdate=21 October 2016}}</ref>

{{div col|colwidth=22em}}
<!-- Burkholderia acidipaludis was reclassified as Paraburkholderia acidipaludis -->
*''[[Burkholderia alpina]]''
*''[[Burkholderia ambifaria]]''
<!-- Burkholderia andropogonis was reclassified as Robbsia andropogonis. -->
*''[[Burkholderia anthina]]''
<!-- Burkholderia arationis was reclassified as Caballeronia arationis. -->
*''[[Burkholderia arboris]]''
<!-- Burkholderia arvi was reclassified as Caballeronia arvi. -->
<!-- Burkholderia aspalathi was reclassified as Paraburkholderia aspalathi. -->
<!-- Burkholderia bannensis was reclassified as Paraburkholderia bannensis. -->
<!-- Burkholderia bryophila was reclassified as Paraburkholderia bryophila. -->
<!-- Burkholderia caballeronis was reclassified as Paraburkholderia caballeronis. -->
<!-- Burkholderia caledonica was reclassified as Paraburkholderia caledonica. -->
<!-- Burkholderia calidae was reclassified as Caballeronia calidae. -->
<!-- Burkholderia caribensis was reclassified as Paraburkholderia caribensis. -->
<!-- Burkholderia caryophylli was reclassified as Paraburkholderia caryophylli. -->
<!-- Burkholderia catudaia was reclassified as Caballeronia catudaia. -->
*''[[Burkholderia cenocepacia]]''
*''[[Burkholderia cepacia]]''
<!-- Burkholderia choica was reclassified as Caballeronia choica. -->
<!-- Burkholderia cocovenenans was reclassified as Burkholderia gladioli. -->
<!-- Burkholderia concitans was reclassified as Caballeronia concitans. -->
*''[[Burkholderia contaminans]]''
<!-- Burkholderia cordobensis was reclassified as Caballeronia cordobensis. -->
<!-- Burkholderia denitrificans was reclassified as Paraburkholderia denitrificans. -->
<!-- Burkholderia diazotrophica was reclassified as Paraburkholderia diazotrophica. -->
*''[[Burkholderia diffusa]]''
<!-- Burkholderia dilworthii was reclassified as Paraburkholderia dilworthii. -->
<!-- Burkholderia dipogonis was reclassified as Paraburkholderia dipogonis. -->
*''[[Burkholderia dolosa]]''
<!-- Burkholderia eburnea was reclassified as Paraburkholderia eburnea. -->
<!-- Burkholderia endofungorum was reclassified as Paraburkholderia endofungorum. -->
<!-- Burkholderia ferrariae was reclassified as Paraburkholderia ferrariae. -->
<!-- Burkholderia fortuita was reclassified as Caballeronia fortuita. -->
<!-- Burkholderia fungorum was reclassified as Paraburkholderia fungorum. -->
<!-- Burkholderia ginsengisoli was reclassified as Paraburkholderia ginsengisoli. -->
<!-- Burkholderia ginsengiterrae was reclassified as Paraburkholderia ginsengiterrae. -->
*''[[Burkholderia gladioli]]''
<!-- Burkholderia glathei was reclassified as Caballeronia glathei. -->
<!-- Burkholderia glebae was reclassified as Caballeronia glebae. -->
*''[[Burkholderia glumae]]''
<!-- Burkholderia graminis was reclassified as Paraburkholderia graminis. -->
<!-- Burkholderia grimmiae was reclassified as Caballeronia grimmiae. -->
<!-- Burkholderia heleia was reclassified as Paraburkholderia heleia. -->
<!-- Burkholderia hospita was reclassified as Paraburkholderia hospita. -->
<!-- Burkholderia humi was reclassified as Caballeronia humi. -->
<!-- Burkholderia humisilvae was reclassified as Paraburkholderia humisilvae. -->
*''[[Burkholderia humptydooensis]]''
<!-- Burkholderia hypogeia was reclassified as Caballeronia hypogeia. -->
<!-- Burkholderia insulsa was reclassified as Paraburkholderia insulsa. -->
<!-- Burkholderia jiangsuensis was reclassified as Caballeronia jiangsuensis. -->
<!-- Burkholderia jirisanensis was reclassified as Paraburkholderia jirisanensis. -->
<!-- Burkholderia kirstenboschensis was reclassified as Paraburkholderia kirstenboschensis. -->
<!-- Burkholderia kururiensis was reclassified as Paraburkholderia kururiensis. -->
*''[[Burkholderia lata]]''
*''[[Burkholderia latens]]''
*''[[Burkholderia mallei]]''
<!-- Burkholderia megalochromosomata was reclassified as Caballeronia megalochromosomata. -->
<!-- Burkholderia megapolitana was reclassified as Paraburkholderia megapolitana. -->
*''[[Burkholderia metallica]]''
<!-- Burkholderia metalliresistens was reclassified as Paraburkholderia metalliresistens. -->
<!-- Burkholderia mimosarum was reclassified as Paraburkholderia mimosarum. -->
<!-- Burkholderia monticola was reclassified as Paraburkholderia monticola. -->
*''[[Burkholderia multivorans]]''
<!-- Burkholderia nodosa was reclassified as Paraburkholderia nodosa. -->
<!-- Burkholderia norimbergensis was reclassified as Pandoraea norimbergensis. -->
*''[[Burkholderia oklahomensis]]''
<!-- Burkholderia oxyphila was reclassified as Paraburkholderia oxyphila. -->
<!-- Burkholderia panaciterrae was reclassified as Paraburkholderia ginsengiterrae. -->
<!-- Burkholderia pedi was reclassified as Caballeronia pedi. -->
<!-- Burkholderia peredens was reclassified as Caballeronia peredens. -->
<!-- Burkholderia phenazinium was reclassified as Paraburkholderia phenazinium. -->
<!-- Burkholderia phenoliruptrix was reclassified as Paraburkholderia phenoliruptrix. -->
<!-- Burkholderia phymatum was reclassified as Paraburkholderia phymatum. -->
<!-- Burkholderia phytofirmans was reclassified as Paraburkholderia phytofirmans. -->
<!-- Burkholderia pickettii was reclassified as Ralstonia pickettii. -->
*''[[Burkholderia plantarii]]''
*''[[Burkholderia pseudomallei]]''
*''[[Burkholderia pseudomultivorans]]''
<!-- Burkholderia ptereochthonis was reclassified as Caballeronia ptereochthonis. -->
*''[[Burkholderia puraquae]]''
*''[[Burkholderia pyrrocinia]]''
<!-- Burkholderia rhizosphaerae was reclassified as Paraburkholderia rhizosphaerae. -->
<!-- Burkholderia rhizoxinica was reclassified as Paraburkholderia rhizoxinica. -->
<!-- Burkholderia rhynchosiae was reclassified as Paraburkholderia rhynchosiae. -->
<!-- Burkholderia sabiae was reclassified as Paraburkholderia sabiae. -->
<!-- Burkholderia sacchari was reclassified as Paraburkholderia sacchari. -->
<!-- Burkholderia sartisoli was reclassified as Paraburkholderia sartisoli. -->
<!-- Burkholderia sediminicola was reclassified as Paraburkholderia sediminicola. -->
*''[[Burkholderia seminalis]]''
<!-- Burkholderia silvatlantica was reclassified as Paraburkholderia silvatlantica. -->
*''[[Burkholderia singaporensis]]''
*''[[Burkholderia singularis]]''
<!-- Burkholderia solanacearum was reclassified as Ralstonia solanacearum. -->
<!-- Burkholderia soli was reclassified as Paraburkholderia soli. -->
<!-- Burkholderia solisilvae was reclassified as Paraburkholderia solisilvae. -->
<!-- Burkholderia sordidicola was reclassified as Caballeronia sordidicola. -->
<!-- Burkholderia sprentiae was reclassified as Paraburkholderia sprentiae. -->
*''[[Burkholderia stabilis]]''
*''[[Burkholderia stagnalis]]''
<!-- Burkholderia susongensis was reclassified as Paraburkholderia susongensis. -->
<!-- Burkholderia symbiotica was reclassified as Paraburkholderia symbiotica. -->
<!-- Burkholderia telluris was reclassified as Caballeronia telluris. -->
<!-- Burkholderia temeraria was reclassified as Caballeronia temeraria. -->
<!-- Burkholderia terrae was reclassified as Paraburkholderia terrae. -->
<!-- Burkholderia terrestris was reclassified as Caballeronia terrestris. -->
<!-- Burkholderia terricola was reclassified as Paraburkholderia terricola. -->
*''[[Burkholderia territorii]]''
*''[[Burkholderia thailandensis]]''
<!-- Burkholderia tropica was reclassified as Paraburkholderia tropica. -->
<!-- Burkholderia tuberum was reclassified as Paraburkholderia tuberum. -->
<!-- Burkholderia turbans was reclassified as Caballeronia turbans. -->
*''[[Burkholderia ubonensis]]''
<!-- Burkholderia udeis was reclassified as Caballeronia udeis. -->
<!-- Burkholderia unamae was reclassified as Paraburkholderia unamae. -->
<!-- Burkholderia vandii was reclassified as Burkholderia plantarii. -->
*''[[Burkholderia vietnamiensis]]''
<!-- Burkholderia xenovorans was reclassified as Paraburkholderia xenovorans. -->
<!-- Burkholderia zhejiangensis was reclassified as Caballeronia zhejiangensis. -->
{{div col end}}

==See also==
*[[MAEB RNA motif]]

Revision as of 09:46, 13 November 2020

Taxonomy

Burkholderia species form a monophyletic group within the Burkholderiales order of the Betaproteobacteria. Currently, the 48 validly named species can be distinguished from related genera (i.e. Paraburkholderia) and all other bacteria by conserved signature indels in a variety of proteins.[1] These indels represent exclusive common ancestry shared among all Burkholderia species.

The genus has three distinct monophyletic clusters. One group consists of all species belonging to the Burkholderia cepacia complex, another clade comprises B. pseudomallei and closely related species, and the last clade encompasses of most of the phytogenic species within the genus, including B. glumae and B. gladioli .[1] Conserved signature indels are specific for each of these subgroups within the genus that aid in demarcating members of this extremely large and diverse genus.[1][2]

Species

List of species:[3]

See also

  1. ^ a b c Cite error: The named reference Sawana was invoked but never defined (see the help page).
  2. ^ Gupta RS (2016). "Impact of genomics on the understanding of microbial evolution and classification: the importance of Darwin's views on classification". FEMS Microbiol Rev. 40 (4): 520–53. doi:10.1093/femsre/fuw011. PMID 27279642.
  3. ^ "List of prokaryotic names with standing in nomenclature". Retrieved 21 October 2016.
Retrieved from "https://en.wikipedia.org/enwiki/w/index.php?title=User:Slacksushi/Burkholderia&oldid=988461871"