File:Phylogenetic analyses of HRV and HEV.jpg
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Summary
| Description |
Original caption: "Phylogenetic analyses of HRV and HEV. This illustrates that recombination events are much more prevalent in the untranslated regions (UTRs) compared with a translated region (VP4/VP2). Separate alignments of the coding (VP4/VP2; 464 nt) and untranslated (5’UTR; 555 nt) regions’ sequences were constructed using MUSCLE v.3.8.31. Maximum likelihood phylogenetic trees were inferred separately for the non-coding and coding regions using PhyML v.3.0 using a general-reversible substitution model with gamma-distributed among-site rate variability. Samples are labeled by following format: “Sample code / Country of collection / Month- Year of collection.” Phylogenetic trees were colored by HRV species: HRV-A, HRV-B, HRV-C, and four types of HEV (HEV-A, HEV-B, HEV-C and HEV-D). In addition, four HRV-C clades show different recombination events and these are denoted individually as HRV-C.I to IV." Copyright/license notice: "Copyright © 2013 Garcia et al.; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited." |
| Date | |
| Source | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3854537/ |
| Author | Josefina Garcia12*, Victoria Espejo1, Martha Nelson2, Merly Sovero1, Manuel V Villaran1, Jorge Gomez3, Melvin Barrantes4, Felix Sanchez5, Guillermo Comach6, Ana E Arango7, Nicolas Aguayo8, Ivette L de Rivera9, Wilson Chicaiza10, Mirna Jimenez11, Washington Aleman12, Francisco Rodriguez13, Marina S Gonzales14, Tadeusz J Kochel15 and Eric S Halsey1 |
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| Date/Time | Thumbnail | Dimensions | User | Comment | |
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| current | 18:50, 25 October 2014 | | 1,200 × 1,528 (224 KB) | Wnt | [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3854537/ Original caption]: "Phylogenetic analyses of HRV and HEV. This illustrates that recombination events are much more prevalent in the untranslated regions (UTRs) compared with a translated region (VP... |
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